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The map label for this gene is pecT [H]

Identifier: 116690502

GI number: 116690502

Start: 2753867

End: 2754790

Strand: Direct

Name: pecT [H]

Synonym: Bcen2424_2482

Alternate gene names: 116690502

Gene position: 2753867-2754790 (Clockwise)

Preceding gene: 116690500

Following gene: 116690507

Centisome position: 79.05

GC content: 71.43

Gene sequence:

>924_bases
ATGATTCATTCTTCAATTCTTGCGTTGAATCGATCCATGCAACCGCCGACCGACCCCGCGTCGACCACGCTCGACATCGC
GCTGCTGCGCACCTTTCTCGAGGTCGTCGACCGCCGCGGGTTCGCGCCGGCCGCGGAACGCCTCGCGCTGACGCCGTCCG
CGGTGAGCGGCCACATCAAGCGGCTCGAACAGGCGGCCGGCACCGTGCTGCTGGCGCGCACCACCCGCCGGATCGCGCTC
ACGCCGGCCGGCGACACGCTGTACGCGTACGCGCGCAACATCGTCGACATGGAACGCGAGGTGCGGGCACGGCTGCGCGG
CGCGCCGGCGCACGGGCCGCTGCGGATCGGCGCGTCGGAGGATTTCGCGGGCACGTGGCTGCCGCAGGTGCTGCGCACCT
TCCGCGACCGCCATCCGCGCGCATCGATCGAACTGAAGGTCGGCATCACCGCATCGCTGCTGCGGGAGCAGACGTTCGGC
CGGCTCGACGTCGTGTTCGGCAAGCAATGCCGACAGGTCGACACGCCTGGCGAACTGCTGTGGGAAGAGCCGCTCGTCTG
GGCCTTCGCGGCCGATACGGCGCTCGACGCCGAGGAAGGCGTGCCGCTCGCGCTGTTTCCGGAACCGTGCGTGTACCGGG
AAGCCGCGGTGTCCGCGCTCGCCGCGGCGCTGCGGCCGTTTCGCGTGCTGTTCGAAAGCGCGAGCATGGCCGGCTGCATG
TCGGCCGCGCTCGCCGGCTTCGCGGTCACGGCACTCGCACGCAGCCAATTGCGCGACGGCTTGCGGGAATGCGGGCCGCA
CGACGGCCTGCCGGCGCTGCCGGCCGCACGCTTTTACGCATTCGCGTCGAAACCCTCAGGCGCCGGCGCCGCGCTGATCG
ACGCGGTGCGGGCCACCGGGCGCACGCGGCAGTTCGCCGCCTGA

Upstream 100 bases:

>100_bases
CGCGGTCGTCGCATGCGCATAGGTCGTCATCGTGTACTCCGTGAAGTCACCGTGAACCTACGATGGTAGGTCGGTCTTTC
ATCACAATTCACGGAGTATC

Downstream 100 bases:

>100_bases
ACACGCGCTGTGCGCTCGTCGCACGGGCCGCCTCGCACCGGAGCCGATCGGCCGGCGAGCAGCAGGCCTGCCCACTGGAT
ACCGGCACGATGCCGCCGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIHSSILALNRSMQPPTDPASTTLDIALLRTFLEVVDRRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLARTTRRIAL
TPAGDTLYAYARNIVDMEREVRARLRGAPAHGPLRIGASEDFAGTWLPQVLRTFRDRHPRASIELKVGITASLLREQTFG
RLDVVFGKQCRQVDTPGELLWEEPLVWAFAADTALDAEEGVPLALFPEPCVYREAAVSALAAALRPFRVLFESASMAGCM
SAALAGFAVTALARSQLRDGLRECGPHDGLPALPAARFYAFASKPSGAGAALIDAVRATGRTRQFAA

Sequences:

>Translated_307_residues
MIHSSILALNRSMQPPTDPASTTLDIALLRTFLEVVDRRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLARTTRRIAL
TPAGDTLYAYARNIVDMEREVRARLRGAPAHGPLRIGASEDFAGTWLPQVLRTFRDRHPRASIELKVGITASLLREQTFG
RLDVVFGKQCRQVDTPGELLWEEPLVWAFAADTALDAEEGVPLALFPEPCVYREAAVSALAAALRPFRVLFESASMAGCM
SAALAGFAVTALARSQLRDGLRECGPHDGLPALPAARFYAFASKPSGAGAALIDAVRATGRTRQFAA
>Mature_307_residues
MIHSSILALNRSMQPPTDPASTTLDIALLRTFLEVVDRRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLARTTRRIAL
TPAGDTLYAYARNIVDMEREVRARLRGAPAHGPLRIGASEDFAGTWLPQVLRTFRDRHPRASIELKVGITASLLREQTFG
RLDVVFGKQCRQVDTPGELLWEEPLVWAFAADTALDAEEGVPLALFPEPCVYREAAVSALAAALRPFRVLFESASMAGCM
SAALAGFAVTALARSQLRDGLRECGPHDGLPALPAARFYAFASKPSGAGAALIDAVRATGRTRQFAA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=267, Percent_Identity=32.2097378277154, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI48994962, Length=155, Percent_Identity=32.9032258064516, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790399, Length=187, Percent_Identity=28.8770053475936, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787806, Length=245, Percent_Identity=24.4897959183673, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=31.4685314685315, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788481, Length=243, Percent_Identity=27.1604938271605, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788887, Length=185, Percent_Identity=30.2702702702703, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788748, Length=186, Percent_Identity=30.6451612903226, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787601, Length=149, Percent_Identity=26.8456375838926, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87081978, Length=99, Percent_Identity=41.4141414141414, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786448, Length=145, Percent_Identity=35.8620689655172, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1786401, Length=121, Percent_Identity=34.7107438016529, Blast_Score=61, Evalue=9e-11,
Organism=Escherichia coli, GI1788706, Length=123, Percent_Identity=30.0813008130081, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33010; Mature: 33010

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHSSILALNRSMQPPTDPASTTLDIALLRTFLEVVDRRGFAPAAERLALTPSAVSGHIK
CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHH
RLEQAAGTVLLARTTRRIALTPAGDTLYAYARNIVDMEREVRARLRGAPAHGPLRIGASE
HHHHHHCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
DFAGTWLPQVLRTFRDRHPRASIELKVGITASLLREQTFGRLDVVFGKQCRQVDTPGELL
CCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHH
WEEPLVWAFAADTALDAEEGVPLALFPEPCVYREAAVSALAAALRPFRVLFESASMAGCM
HCCCEEEEEECCCCCCHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAALAGFAVTALARSQLRDGLRECGPHDGLPALPAARFYAFASKPSGAGAALIDAVRATG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCC
RTRQFAA
CCCCCCC
>Mature Secondary Structure
MIHSSILALNRSMQPPTDPASTTLDIALLRTFLEVVDRRGFAPAAERLALTPSAVSGHIK
CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHH
RLEQAAGTVLLARTTRRIALTPAGDTLYAYARNIVDMEREVRARLRGAPAHGPLRIGASE
HHHHHHCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
DFAGTWLPQVLRTFRDRHPRASIELKVGITASLLREQTFGRLDVVFGKQCRQVDTPGELL
CCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHH
WEEPLVWAFAADTALDAEEGVPLALFPEPCVYREAAVSALAAALRPFRVLFESASMAGCM
HCCCEEEEEECCCCCCHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAALAGFAVTALARSQLRDGLRECGPHDGLPALPAARFYAFASKPSGAGAALIDAVRATG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCC
RTRQFAA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]