BacMap

Definition	Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession	NC_008542
Length	3,483,902

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The map label for this gene is ygfF [C]

Identifier: 116690499

GI number: 116690499

Start: 2751194

End: 2751931

Strand: Direct

Name: ygfF [C]

Synonym: Bcen2424_2479

Alternate gene names: 116690499

Gene position: 2751194-2751931 (Clockwise)

Preceding gene: 116690497

Following gene: 116690500

Centisome position: 78.97

GC content: 69.51

Gene sequence:

>738_bases
ATGAGCACATCGGAACAGGTCGCCGTCGTCACGGGTTCGTCGCGCGGCATCGGCGCGGAAATCGCCCGCCAACTCGCCCG
GGACGGCTTCCGGGTCGTCGTCAACTATGCCGGGAGCGCCGGCCCGGCCCGCGAAGTGGTCGACGCGATCGTCGCCGACG
GCGGCCATGCGATCGCGGTGCAGGCGAACGTCGCCGACCCGGCGGCCGTGGCCGCGCTGTTCGACGCCGCGCAACACGCA
TTCGGCGGTCTGGATGTGGTGGTCAATTCCGCGGGCGTGATGAAGCTCGCGACCATCGCCGACTGCGACGATGCGCTGTT
CGACGAAACGCTCGCCATCAACGTGAAAGGCACCTTCAACGTCTGCCGCGAAGCGGCCAGGCGGGTGCGCGACGGCGGAT
GCATCATCAACCTGTCGACCAGCGTGATCGGCATGCGCATGCCGACTTACGGCGTGTACGTCGCCAGCAAGGCGGCGGTC
GAAAGCCTCACGCAGGTGCTTGCGCAGGAAATGCGCGGGCGCGGCATCCGCGTGAATGCCGTCGCGCCCGGGCCGGTCGC
GACCGAGCTGTTCCTGCAGGGCAAGAGCCCGGAACTCGTCGAGCGGCTCGCGAAGCTGAACCCGCTCGAGCGGCTCGGCC
AGCCCGACGACATCGCGCGCGTCGTCGCGTTCCTCGCCGGCCCGAACGGCGCGTGGATCAACGGCCAGATCCTGCGCGCC
AACGGCGGCATGTGCTGA

Upstream 100 bases:

>100_bases
CATCGACTGATCATTATTCATTATTTTTATTGATCGCGGAAGCCTACAGTTGTCCTGTCGCCGGATCGAACGGCATTCAT
CCAGTCATCAGGAGCAGGAC

Downstream 100 bases:

>100_bases
CGCCCCCTCGCCGCCACCTCATCTTTCTGCCAGGAGATCGCTCATGAAGGAAGTCGTCCTCGTCACCGGCGCGTCCAGCG
GCTTCGGCTTGCTGACGGTC

Product: short-chain dehydrogenase/reductase SDR

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MSTSEQVAVVTGSSRGIGAEIARQLARDGFRVVVNYAGSAGPAREVVDAIVADGGHAIAVQANVADPAAVAALFDAAQHA
FGGLDVVVNSAGVMKLATIADCDDALFDETLAINVKGTFNVCREAARRVRDGGCIINLSTSVIGMRMPTYGVYVASKAAV
ESLTQVLAQEMRGRGIRVNAVAPGPVATELFLQGKSPELVERLAKLNPLERLGQPDDIARVVAFLAGPNGAWINGQILRA
NGGMC

Sequences:

>Translated_245_residues
MSTSEQVAVVTGSSRGIGAEIARQLARDGFRVVVNYAGSAGPAREVVDAIVADGGHAIAVQANVADPAAVAALFDAAQHA
FGGLDVVVNSAGVMKLATIADCDDALFDETLAINVKGTFNVCREAARRVRDGGCIINLSTSVIGMRMPTYGVYVASKAAV
ESLTQVLAQEMRGRGIRVNAVAPGPVATELFLQGKSPELVERLAKLNPLERLGQPDDIARVVAFLAGPNGAWINGQILRA
NGGMC
>Mature_244_residues
STSEQVAVVTGSSRGIGAEIARQLARDGFRVVVNYAGSAGPAREVVDAIVADGGHAIAVQANVADPAAVAALFDAAQHAF
GGLDVVVNSAGVMKLATIADCDDALFDETLAINVKGTFNVCREAARRVRDGGCIINLSTSVIGMRMPTYGVYVASKAAVE
SLTQVLAQEMRGRGIRVNAVAPGPVATELFLQGKSPELVERLAKLNPLERLGQPDDIARVVAFLAGPNGAWINGQILRAN
GGMC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=34.136546184739, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=34.8, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI5031737, Length=237, Percent_Identity=31.2236286919831, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=28.2868525896414, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI109715829, Length=234, Percent_Identity=29.4871794871795, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=27.3809523809524, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=32.2751322751323, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=27.8008298755187, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=28.7937743190661, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI66933014, Length=176, Percent_Identity=29.5454545454545, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI59889578, Length=177, Percent_Identity=31.638418079096, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI31542939, Length=236, Percent_Identity=27.9661016949153, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI40254986, Length=185, Percent_Identity=27.5675675675676, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=32.258064516129, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI4502601, Length=236, Percent_Identity=27.5423728813559, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI4504505, Length=256, Percent_Identity=30.078125, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=35.2459016393443, Blast_Score=140, Evalue=6e-35,
Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=32.9268292682927, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI87082100, Length=249, Percent_Identity=34.136546184739, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=33.4728033472803, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787905, Length=240, Percent_Identity=33.3333333333333, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789378, Length=239, Percent_Identity=31.3807531380753, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789208, Length=255, Percent_Identity=30.1960784313725, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=28.9156626506024, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=31.6872427983539, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=28.6885245901639, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=32.156862745098, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=27.5193798449612, Blast_Score=75, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=30.8943089430894, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=30.9160305343511, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17536651, Length=247, Percent_Identity=30.7692307692308, Blast_Score=103, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=30.4878048780488, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=28.1124497991968, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=258, Percent_Identity=30.6201550387597, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17536025, Length=247, Percent_Identity=30.3643724696356, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=32, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=30.2040816326531, Blast_Score=98, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=30.2681992337165, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17561272, Length=199, Percent_Identity=33.1658291457286, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=28.2442748091603, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=31.5384615384615, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=30.8880308880309, Blast_Score=87, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=28, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=251, Percent_Identity=28.2868525896414, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=250, Percent_Identity=28.8, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=244, Percent_Identity=27.8688524590164, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=29.3233082706767, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=262, Percent_Identity=32.0610687022901, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=258, Percent_Identity=30.2325581395349, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=251, Percent_Identity=28.2868525896414, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=29.5019157088123, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=27.2373540856031, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71982365, Length=189, Percent_Identity=30.6878306878307, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=29.3233082706767, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=28.5171102661597, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17558628, Length=189, Percent_Identity=31.7460317460317, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=28.1853281853282, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=232, Percent_Identity=28.448275862069, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=27.710843373494, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71997099, Length=205, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=201, Percent_Identity=30.3482587064677, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6324126, Length=167, Percent_Identity=29.940119760479, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=28.4974093264249, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=34.2741935483871, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=31.2252964426877, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=31.8897637795276, Blast_Score=100, Evalue=6e-22,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=31.7647058823529, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=27.843137254902, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=28.6307053941909, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24644337, Length=174, Percent_Identity=35.0574712643678, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24641232, Length=253, Percent_Identity=29.6442687747036, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21357673, Length=187, Percent_Identity=33.1550802139037, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=30.859375, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24648944, Length=250, Percent_Identity=31.6, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24648693, Length=203, Percent_Identity=32.0197044334975, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21355889, Length=203, Percent_Identity=32.0197044334975, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=31.3131313131313, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI116007234, Length=237, Percent_Identity=29.1139240506329, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281364494, Length=223, Percent_Identity=28.6995515695067, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24663911, Length=240, Percent_Identity=27.5, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24641388, Length=201, Percent_Identity=33.8308457711443, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007238, Length=219, Percent_Identity=27.8538812785388, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331218, Length=240, Percent_Identity=28.3333333333333, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571387, Length=250, Percent_Identity=28.4, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24665243, Length=240, Percent_Identity=28.3333333333333, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI18859837, Length=249, Percent_Identity=30.1204819277108, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007232, Length=187, Percent_Identity=29.9465240641711, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221331216, Length=248, Percent_Identity=28.2258064516129, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24665247, Length=240, Percent_Identity=28.3333333333333, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 25369; Mature: 25238

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSEQVAVVTGSSRGIGAEIARQLARDGFRVVVNYAGSAGPAREVVDAIVADGGHAIAV
CCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEE
QANVADPAAVAALFDAAQHAFGGLDVVVNSAGVMKLATIADCDDALFDETLAINVKGTFN
EECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHCCCHHHHCCEEEEEECCHHH
VCREAARRVRDGGCIINLSTSVIGMRMPTYGVYVASKAAVESLTQVLAQEMRGRGIRVNA
HHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEE
VAPGPVATELFLQGKSPELVERLAKLNPLERLGQPDDIARVVAFLAGPNGAWINGQILRA
ECCCCHHHHEEECCCCHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCCCEECCEEEEC
NGGMC
CCCCC
>Mature Secondary Structure 
STSEQVAVVTGSSRGIGAEIARQLARDGFRVVVNYAGSAGPAREVVDAIVADGGHAIAV
CCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEE
QANVADPAAVAALFDAAQHAFGGLDVVVNSAGVMKLATIADCDDALFDETLAINVKGTFN
EECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHCCCHHHHCCEEEEEECCHHH
VCREAARRVRDGGCIINLSTSVIGMRMPTYGVYVASKAAVESLTQVLAQEMRGRGIRVNA
HHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEE
VAPGPVATELFLQGKSPELVERLAKLNPLERLGQPDDIARVVAFLAGPNGAWINGQILRA
ECCCCHHHHEEECCCCHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCCCEECCEEEEC
NGGMC
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]