Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is 116690497

Identifier: 116690497

GI number: 116690497

Start: 2748448

End: 2749632

Strand: Direct

Name: 116690497

Synonym: Bcen2424_2477

Alternate gene names: NA

Gene position: 2748448-2749632 (Clockwise)

Preceding gene: 116690496

Following gene: 116690499

Centisome position: 78.89

GC content: 71.14

Gene sequence:

>1185_bases
ATGACGCTTCCCGCCCTGTTGCGACGTCCCACCCTGTTGCGCCGCACCCGCCGCGCCGCCGGCGCCGCCCTCGTGCTGGC
CTGCGCGGCCGCGCATGCCGACCTGAAGGTCGGCGTCGACCTGTCGTCGACCGGCCCGGCCGCCGCGATCGGCATCACGA
GCAAGAACGCGATCCTGATGTGGCCGAAGACGATCGCCGGGCAACCCGTGCAGGTCACGGTGCTCGACGACGCGTCCGAC
CCGGGCGCGGCGGTACGCAACATCCGCAAGCTGGTCGACGAGGATCACGTCGACGTCGTGGTCGGCCCGAACATCACGCC
GGCCGCGCTCGCGGCGCTCGACGCAGTGGCGGCCGCGCAGACGCCGATGATCACGCTGGTCGGCTCGGGCTCGATCGTCG
AGCCGCAGGAGGGCGCGCGGACCTGGGCATTCAAGATGGCGCAGAGCGACCGCGCGATGGCCGACGTGATGACCCGCTAC
ATGGCCAACCACGGCGTGAAGACGGTCGGCTTCATCGGCTTCGCGGACAGCTACGGCGACAGCTGGCTCAACGAATTCAC
GCGCTTCGCGGACCTGCGCAAGATCCGCGTGATCGCGACCGAGCGCTTCAACCGCACCGACGCGAGCGTCACCGGCCAGG
CGCTGAAACTGATCGCGGCGAAGCCGGACGCGATCCTGATCGCGGGCGCCGGTACGCCGACCGTGCTGCCGCAGCGCACG
CTGATCGAGCGCGGCTACAAGGGCCCGATCTACCAGACGCACGGGATCGCGACGCCGGAATTCATCAAGCTCGGCGGCAA
GGACGTGGACGGGACGCTGTTTCCGACCCAGCCGGTGGTCGTCGCCCGCACGCTGCCGGCCGACCACCCGGCCCGCCAGG
CCGCGCTCGCGTTCGTCGACGCGTACGAGGCGAAATACGGCGCCGGCACGGTCACGCAGTTCGCGGGCGATGCGGCGGGC
GTGTACCCGCGCCTCGCCGATGCGGTCGGCCGCGCGCTGAAAGCGGCGCAACCCGGCACGCCCGCGTTCCGCGCGGCGCT
GCGCCGCGAGCTCGAACGCGCGCACGAGCTCGTCGTGCCGAACGGCGTCGTCAATACCAGCGACAAGGATCACGTGGGGC
TCGACCAGCGCGCGAGCGTGATGGGGATCGTGAAGCAGGGCCGGTTCGTGTACCTGAGCCAGTAG

Upstream 100 bases:

>100_bases
AAGGGCGAAGCCGAATCGTACGAGCTTTGACGGACAGGTATGAACACGGGGGCGCACATTGCGCCCCTTTTCGTTGCCCG
ACGGAGATGGAGATTCCCGC

Downstream 100 bases:

>100_bases
CAGAAGCAGCCGGTCGCCGGGCTGCTTGCCCGGTGCCCGGTTTTCCGCCATAATTCGCGTTTCGCCGCGCACAATCTGCA
TCGGGCGCGCGGCCAGGATC

Product: branched chain amino acid ABC transporter periplasmic ligand-binding protein

Products: NA

Alternate protein names: Amino Acid ABC Transporter Periplasmic Protein; Branched-Chain Amino Acid ABC Transporter; Branched-Chain Amino Acid Transporter

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MTLPALLRRPTLLRRTRRAAGAALVLACAAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQPVQVTVLDDASD
PGAAVRNIRKLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGSGSIVEPQEGARTWAFKMAQSDRAMADVMTRY
MANHGVKTVGFIGFADSYGDSWLNEFTRFADLRKIRVIATERFNRTDASVTGQALKLIAAKPDAILIAGAGTPTVLPQRT
LIERGYKGPIYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARQAALAFVDAYEAKYGAGTVTQFAGDAAG
VYPRLADAVGRALKAAQPGTPAFRAALRRELERAHELVVPNGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ

Sequences:

>Translated_394_residues
MTLPALLRRPTLLRRTRRAAGAALVLACAAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQPVQVTVLDDASD
PGAAVRNIRKLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGSGSIVEPQEGARTWAFKMAQSDRAMADVMTRY
MANHGVKTVGFIGFADSYGDSWLNEFTRFADLRKIRVIATERFNRTDASVTGQALKLIAAKPDAILIAGAGTPTVLPQRT
LIERGYKGPIYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARQAALAFVDAYEAKYGAGTVTQFAGDAAG
VYPRLADAVGRALKAAQPGTPAFRAALRRELERAHELVVPNGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ
>Mature_393_residues
TLPALLRRPTLLRRTRRAAGAALVLACAAAHADLKVGVDLSSTGPAAAIGITSKNAILMWPKTIAGQPVQVTVLDDASDP
GAAVRNIRKLVDEDHVDVVVGPNITPAALAALDAVAAAQTPMITLVGSGSIVEPQEGARTWAFKMAQSDRAMADVMTRYM
ANHGVKTVGFIGFADSYGDSWLNEFTRFADLRKIRVIATERFNRTDASVTGQALKLIAAKPDAILIAGAGTPTVLPQRTL
IERGYKGPIYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARQAALAFVDAYEAKYGAGTVTQFAGDAAGV
YPRLADAVGRALKAAQPGTPAFRAALRRELERAHELVVPNGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ

Specific function: Unknown

COG id: COG0683

COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41670; Mature: 41539

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPALLRRPTLLRRTRRAAGAALVLACAAAHADLKVGVDLSSTGPAAAIGITSKNAILM
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCEEEE
WPKTIAGQPVQVTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAALAALDAVAAAQ
CCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCC
TPMITLVGSGSIVEPQEGARTWAFKMAQSDRAMADVMTRYMANHGVKTVGFIGFADSYGD
CCEEEEECCCCEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
SWLNEFTRFADLRKIRVIATERFNRTDASVTGQALKLIAAKPDAILIAGAGTPTVLPQRT
HHHHHHHHHHHHHHEEEEEHHCCCCCCCHHHHHHHHEEECCCCEEEEECCCCCCCCCCHH
LIERGYKGPIYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARQAALAFVD
HHHCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
AYEAKYGAGTVTQFAGDAAGVYPRLADAVGRALKAAQPGTPAFRAALRRELERAHELVVP
HHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECC
NGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ
CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
>Mature Secondary Structure 
TLPALLRRPTLLRRTRRAAGAALVLACAAAHADLKVGVDLSSTGPAAAIGITSKNAILM
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCEEEE
WPKTIAGQPVQVTVLDDASDPGAAVRNIRKLVDEDHVDVVVGPNITPAALAALDAVAAAQ
CCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCC
TPMITLVGSGSIVEPQEGARTWAFKMAQSDRAMADVMTRYMANHGVKTVGFIGFADSYGD
CCEEEEECCCCEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
SWLNEFTRFADLRKIRVIATERFNRTDASVTGQALKLIAAKPDAILIAGAGTPTVLPQRT
HHHHHHHHHHHHHHEEEEEHHCCCCCCCHHHHHHHHEEECCCCEEEEECCCCCCCCCCHH
LIERGYKGPIYQTHGIATPEFIKLGGKDVDGTLFPTQPVVVARTLPADHPARQAALAFVD
HHHCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
AYEAKYGAGTVTQFAGDAAGVYPRLADAVGRALKAAQPGTPAFRAALRRELERAHELVVP
HHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECC
NGVVNTSDKDHVGLDQRASVMGIVKQGRFVYLSQ
CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA