| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is metG [H]
Identifier: 116690457
GI number: 116690457
Start: 2705956
End: 2708112
Strand: Direct
Name: metG [H]
Synonym: Bcen2424_2437
Alternate gene names: 116690457
Gene position: 2705956-2708112 (Clockwise)
Preceding gene: 116690456
Following gene: 116690460
Centisome position: 77.67
GC content: 65.0
Gene sequence:
>2157_bases ATGTCCGCATCCGACCTCACTTCCGTGCAGGCTGCGGCGCCGCAAGGCAGCCGCCAGATCCTCGTTACGTCCGCACTGCC CTATGCCAACGGGCAGATCCACATCGGCCACCTGGTCGAGTACATCCAGACCGACATCTGGGTGCGGACGCTGCGAATGC ATGGCCATGAGGTCTACTACATCGGCGCCGACGATACGCACGGCACGCCGATCATGCTGCGCGCGGAGAAGGAAGGCCTG ACGCCGAAGCAGCTGATCGACCGCGTGTGGACCGAGCACAAGCGCGACTTCGACAGCTTCGGCGTGTCGTTCGACAATTT CTACACGACCGATTCGGAAGAAAACCGCGTGCTGAGCGAGAACATCTATCTCGCGCTGCAGGAAGCCGGCCTGATCGCCG AACGCGAAATCGAGCAAGCCTACGATCCGGTCAAGGAAATGTTCCTGCCGGACCGCTTCATCAAGGGCGAGTGTCCGAAG TGTCACGCGAAGGACCAGTACGGCGACAGCTGCGAGGTGTGCGGCTCGACCTACCTGCCGACCGAACTGCTGAATCCGTA TTCGGTCGTGTCGGGCGCGACGCCGGTGCGCAAGACCTCGAAGCACTACTTCTTCCGCCTGTCCGACCCGCGCTGCGAAT CGTTCCTGCGCGAGTGGGTGAGCGGCCTCGCGCAGCCCGAAGCGACCAACAAGATGCGCGAATGGCTCGGCGACGCCGGC GAATCCAAGCTCGCCGACTGGGACATCTCGCGCGACGCGCCGTACTTCGGCTTCGAGATCCCCGGTGCGCCCGGCAAGTA TTTCTACGTGTGGCTCGACGCGCCGGTCGGCTACTACGCGAGCTTCAAGAACCTGTGCGAGCGCAACGGCATCGATTTCG ATGCGTGGATCCGCCCGGGCTCGAAGGCCGAGCAGTACCACTTCATCGGCAAGGACATTCTGTACTTCCACACGCTGTTC TGGCCCGCGATGCTCGAATTCTCGGGCCACCGCACGCCGACCAACGTGTTCGCGCACGGCTTCCTGACGGTCGACGGCGC GAAGATGTCGAAGTCGCGCGGCACGTTCATCACCGCGCAGAGCTACATCGACACCGGCCTGAACCCCGAGTGGCTGCGCT ACTACTTCGCCGCGAAGCTGAACGCGACGATGGAAGACATCGACCTGAACCTCGACGACTTCCAGGCGCGCGTGAACAGC GACCTCGTCGGCAAGTACGTGAACATCGCGAGCCGCGCGGCCGGCTTCCTGATCAAGCGTTTCGACGGTCGCGTGCAGGA CAGCGCGATGAATCATCCGCTCGTCGCAAAGCTGCGCGATGCGATTCCACAGATCGCCGCGAGCTACGAAGCACGCGAAT ACGGCCGCGCGCTGCGCCACACGATGGAGCTCGCGGACGAAGTGAACGCGTACGTCGACGGCGCGAAGCCGTGGGATCTC GCGAAGGACCCGGCCAACGCGGTCGCGCTGCACGAAACCTGCAGCGTGAGCCTCGAGGCCTTCCGCCTGCTGTCGCTCGC GCTGAAGCCGGTGATGCCGCGCGTGGCCGTTGCGGTCGAGGCGTTCTTCGGGATCGCGCCGCTCGCGTGGGCCGACGCCG CGAAGCCGCTGTCGTCGGCGCAACCGATCAAGGCGTACCAGCACCTGATGACGCGCGTCGATGCGAAGCAGATCGAAGCG CTGCTCGCCGCGAACCGCGATTCGCTGCAGGCCGAGGCAGCCGGCGCGGCCGCCGCGGGCGCCAATGCCGCGAAGGATGC GAAGAGCAACGCGAAGGCGAGCGCGAAGCCGGCGGCCGTGAACGGCGCCGACGACGCACCGATCTCGATCGACGATTTCG CGAAGATCGATCTGCGCATCGCGAAGATCGTCGCGTGTCAGGCGGTCGAAGGCTCGGACAAGCTGCTGCAGCTCACGCTC GACGTCGGCGAGGAAAAGACCCGCAACGTGTTCTCGGGCATCAAGTCCGCGTATCAGCCCGAGCAGCTCGTCGGCAAGCT GACGGTGATGGTCGCGAACCTCGCGCCGCGCAAGATGAAGTTCGGCCTGTCCGAAGGGATGGTGCTCGCCGCATCGGCCA CCGACGAGAAGGCGGAACCGGGCCTCTACATCCTCGAACCGCACAGCGGCGCGAAGCCCGGCATGCGCGTGAAGTAA
Upstream 100 bases:
>100_bases GCAGCCGGCCGGTCCACGGCACCCGCCCGCCGCGCGAGCCCGCGCCCCTGCTAGAATCGCAGTTTCCCGTCGTTTTTCCC GCTGTTCTTCTCCAGACCCT
Downstream 100 bases:
>100_bases GCGCAACGCGCAGCTGCTGCTTGCGCAAAAAAGCCCCGCACGACTTGCATCGTGCGGGGCTTTTTTATCGCTGCCCGGTA TGCCGCGCCCTTCGTCAGCG
Product: methionyl-tRNA synthetase
Products: NA
Alternate protein names: Methionine--tRNA ligase; MetRS [H]
Number of amino acids: Translated: 718; Mature: 717
Protein sequence:
>718_residues MSASDLTSVQAAAPQGSRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYIGADDTHGTPIMLRAEKEGL TPKQLIDRVWTEHKRDFDSFGVSFDNFYTTDSEENRVLSENIYLALQEAGLIAEREIEQAYDPVKEMFLPDRFIKGECPK CHAKDQYGDSCEVCGSTYLPTELLNPYSVVSGATPVRKTSKHYFFRLSDPRCESFLREWVSGLAQPEATNKMREWLGDAG ESKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLCERNGIDFDAWIRPGSKAEQYHFIGKDILYFHTLF WPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSYIDTGLNPEWLRYYFAAKLNATMEDIDLNLDDFQARVNS DLVGKYVNIASRAAGFLIKRFDGRVQDSAMNHPLVAKLRDAIPQIAASYEAREYGRALRHTMELADEVNAYVDGAKPWDL AKDPANAVALHETCSVSLEAFRLLSLALKPVMPRVAVAVEAFFGIAPLAWADAAKPLSSAQPIKAYQHLMTRVDAKQIEA LLAANRDSLQAEAAGAAAAGANAAKDAKSNAKASAKPAAVNGADDAPISIDDFAKIDLRIAKIVACQAVEGSDKLLQLTL DVGEEKTRNVFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYILEPHSGAKPGMRVK
Sequences:
>Translated_718_residues MSASDLTSVQAAAPQGSRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYIGADDTHGTPIMLRAEKEGL TPKQLIDRVWTEHKRDFDSFGVSFDNFYTTDSEENRVLSENIYLALQEAGLIAEREIEQAYDPVKEMFLPDRFIKGECPK CHAKDQYGDSCEVCGSTYLPTELLNPYSVVSGATPVRKTSKHYFFRLSDPRCESFLREWVSGLAQPEATNKMREWLGDAG ESKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLCERNGIDFDAWIRPGSKAEQYHFIGKDILYFHTLF WPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSYIDTGLNPEWLRYYFAAKLNATMEDIDLNLDDFQARVNS DLVGKYVNIASRAAGFLIKRFDGRVQDSAMNHPLVAKLRDAIPQIAASYEAREYGRALRHTMELADEVNAYVDGAKPWDL AKDPANAVALHETCSVSLEAFRLLSLALKPVMPRVAVAVEAFFGIAPLAWADAAKPLSSAQPIKAYQHLMTRVDAKQIEA LLAANRDSLQAEAAGAAAAGANAAKDAKSNAKASAKPAAVNGADDAPISIDDFAKIDLRIAKIVACQAVEGSDKLLQLTL DVGEEKTRNVFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYILEPHSGAKPGMRVK >Mature_717_residues SASDLTSVQAAAPQGSRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYYIGADDTHGTPIMLRAEKEGLT PKQLIDRVWTEHKRDFDSFGVSFDNFYTTDSEENRVLSENIYLALQEAGLIAEREIEQAYDPVKEMFLPDRFIKGECPKC HAKDQYGDSCEVCGSTYLPTELLNPYSVVSGATPVRKTSKHYFFRLSDPRCESFLREWVSGLAQPEATNKMREWLGDAGE SKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLCERNGIDFDAWIRPGSKAEQYHFIGKDILYFHTLFW PAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSYIDTGLNPEWLRYYFAAKLNATMEDIDLNLDDFQARVNSD LVGKYVNIASRAAGFLIKRFDGRVQDSAMNHPLVAKLRDAIPQIAASYEAREYGRALRHTMELADEVNAYVDGAKPWDLA KDPANAVALHETCSVSLEAFRLLSLALKPVMPRVAVAVEAFFGIAPLAWADAAKPLSSAQPIKAYQHLMTRVDAKQIEAL LAANRDSLQAEAAGAAAAGANAAKDAKSNAKASAKPAAVNGADDAPISIDDFAKIDLRIAKIVACQAVEGSDKLLQLTLD VGEEKTRNVFSGIKSAYQPEQLVGKLTVMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYILEPHSGAKPGMRVK
Specific function: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation [H]
COG id: COG0143
COG function: function code J; Methionyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI14043022, Length=608, Percent_Identity=26.9736842105263, Blast_Score=219, Evalue=7e-57, Organism=Homo sapiens, GI24308436, Length=538, Percent_Identity=26.9516728624535, Blast_Score=155, Evalue=9e-38, Organism=Homo sapiens, GI215490011, Length=115, Percent_Identity=34.7826086956522, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI215490009, Length=115, Percent_Identity=34.7826086956522, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI45006986, Length=115, Percent_Identity=34.7826086956522, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI4507947, Length=139, Percent_Identity=33.8129496402878, Blast_Score=67, Evalue=7e-11, Organism=Escherichia coli, GI1788432, Length=714, Percent_Identity=52.8011204481793, Blast_Score=740, Evalue=0.0, Organism=Caenorhabditis elegans, GI17540794, Length=677, Percent_Identity=25.9970457902511, Blast_Score=225, Evalue=5e-59, Organism=Caenorhabditis elegans, GI212645096, Length=519, Percent_Identity=24.8554913294798, Blast_Score=134, Evalue=2e-31, Organism=Caenorhabditis elegans, GI71992781, Length=344, Percent_Identity=25.2906976744186, Blast_Score=98, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6321704, Length=564, Percent_Identity=27.8368794326241, Blast_Score=226, Evalue=1e-59, Organism=Saccharomyces cerevisiae, GI6321610, Length=544, Percent_Identity=25.3676470588235, Blast_Score=127, Evalue=5e-30, Organism=Drosophila melanogaster, GI24655311, Length=528, Percent_Identity=29.9242424242424, Blast_Score=227, Evalue=2e-59, Organism=Drosophila melanogaster, GI21358483, Length=519, Percent_Identity=27.5529865125241, Blast_Score=137, Evalue=3e-32,
Paralogues:
None
Copy number: 871 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR015413 - InterPro: IPR004495 - InterPro: IPR014758 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR014729 - InterPro: IPR002547 - InterPro: IPR009080 - InterPro: IPR013155 [H]
Pfam domain/function: PF08264 Anticodon_1; PF09334 tRNA-synt_1g; PF01588 tRNA_bind [H]
EC number: =6.1.1.10 [H]
Molecular weight: Translated: 79228; Mature: 79096
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: PS50886 TRBD ; PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASDLTSVQAAAPQGSRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYY CCCCHHCHHHHCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEEEE IGADDTHGTPIMLRAEKEGLTPKQLIDRVWTEHKRDFDSFGVSFDNFYTTDSEENRVLSE EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCEECCCCCCCCEECC NIYLALQEAGLIAEREIEQAYDPVKEMFLPDRFIKGECPKCHAKDQYGDSCEVCGSTYLP CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHCCCCCCC TELLNPYSVVSGATPVRKTSKHYFFRLSDPRCESFLREWVSGLAQPEATNKMREWLGDAG HHHCCCHHHHCCCCCCHHCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC ESKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLCERNGIDFDAWIRPG CCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHEECCC SKAEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQ CCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCCCCCCCCCCEEEEH SYIDTGLNPEWLRYYFAAKLNATMEDIDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKR HHHCCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FDGRVQDSAMNHPLVAKLRDAIPQIAASYEAREYGRALRHTMELADEVNAYVDGAKPWDL HCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AKDPANAVALHETCSVSLEAFRLLSLALKPVMPRVAVAVEAFFGIAPLAWADAAKPLSSA CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC QPIKAYQHLMTRVDAKQIEALLAANRDSLQAEAAGAAAAGANAAKDAKSNAKASAKPAAV CHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCHHCCCCHHHHHHCCCCCCCCCCCC NGADDAPISIDDFAKIDLRIAKIVACQAVEGSDKLLQLTLDVGEEKTRNVFSGIKSAYQP CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCH EQLVGKLTVMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYILEPHSGAKPGMRVK HHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCC >Mature Secondary Structure SASDLTSVQAAAPQGSRQILVTSALPYANGQIHIGHLVEYIQTDIWVRTLRMHGHEVYY CCCHHCHHHHCCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCEEEE IGADDTHGTPIMLRAEKEGLTPKQLIDRVWTEHKRDFDSFGVSFDNFYTTDSEENRVLSE EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCEECCCCCCCCEECC NIYLALQEAGLIAEREIEQAYDPVKEMFLPDRFIKGECPKCHAKDQYGDSCEVCGSTYLP CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCHHHCCCCCCC TELLNPYSVVSGATPVRKTSKHYFFRLSDPRCESFLREWVSGLAQPEATNKMREWLGDAG HHHCCCHHHHCCCCCCHHCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC ESKLADWDISRDAPYFGFEIPGAPGKYFYVWLDAPVGYYASFKNLCERNGIDFDAWIRPG CCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHEECCC SKAEQYHFIGKDILYFHTLFWPAMLEFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQ CCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEECCCCCCCCCCCEEEEH SYIDTGLNPEWLRYYFAAKLNATMEDIDLNLDDFQARVNSDLVGKYVNIASRAAGFLIKR HHHCCCCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH FDGRVQDSAMNHPLVAKLRDAIPQIAASYEAREYGRALRHTMELADEVNAYVDGAKPWDL HCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AKDPANAVALHETCSVSLEAFRLLSLALKPVMPRVAVAVEAFFGIAPLAWADAAKPLSSA CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCC QPIKAYQHLMTRVDAKQIEALLAANRDSLQAEAAGAAAAGANAAKDAKSNAKASAKPAAV CHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCHHCCCCHHHHHHCCCCCCCCCCCC NGADDAPISIDDFAKIDLRIAKIVACQAVEGSDKLLQLTLDVGEEKTRNVFSGIKSAYQP CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCH EQLVGKLTVMVANLAPRKMKFGLSEGMVLAASATDEKAEPGLYILEPHSGAKPGMRVK HHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA