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The map label for this gene is yiaD [H]

Identifier: 116690456

GI number: 116690456

Start: 2704929

End: 2705576

Strand: Direct

Name: yiaD [H]

Synonym: Bcen2424_2436

Alternate gene names: 116690456

Gene position: 2704929-2705576 (Clockwise)

Preceding gene: 116690450

Following gene: 116690457

Centisome position: 77.64

GC content: 68.67

Gene sequence:

>648_bases
ATGAACATGAAAATCGCGACTCGCCTGTCCGTATTCGCACTCGCCGGCGCACTGCTGGCAGGCTGCGCCACGCAGCAAGG
CAACAATACGGCCGTCGGTACCGGCACGGGCGCGGCGCTGGGCGCGGGGATCGGGGCACTGGCCGGTGGCGGCAAGGGCG
CGGCGATCGGCGCGGGCGTCGGCGCACTGGTCGGTGGCGTGACGGGTTACAACTGGCAGGCGATCAAGAACAAGCTCGCG
CCGTCGGCAGCGCAGACGGGCACGCAGGTCACCGAGCAGCCGGACGGCTCGCTGAAGCTGAACGTGCCGAGCTCGGTCAC
GTTCGCGACGAACCAGTACGCGATCACGCCGGCGTTCACGCCGCTGCTGAACGACCTCGCGACGACGCTGAACCAGAACC
CGCAAGTCACGGCGTCGATCGTCGGCTACACGGACAGCACGGGCTCGCAGCAGCTGAACCAGACGCTGTCGCAGAACCGC
GCGCAAAGCGTCGTGAACGCGCTCGTGCAGCGCGGCGTGAATGGCGGCCGTCTGTCGGCGCAAGGCATGGGCCCGTCGAA
CCCGATCGCGGACAACGCGACCGAAGCCGGCCGCGCACAGAACCGCCGCGTCGAGATCTACCTGCGCGCGCCGCAACAGC
ATCAGTAA

Upstream 100 bases:

>100_bases
AAGCGCAGGCCGGCCCTCCTTTTTCGGACGGCCCGCGCAGGGAGCCATAACTGTTGTTTGTCGTCGTTGTCGACTCGTTC
AACCAAGAGAGGAATCCAAG

Downstream 100 bases:

>100_bases
GCGCAACCACGAGGGGAATCGTGCGGGCATCCTGCCCGCACAGCCCCGCCGGATAAGGCTTTCGGCGGAGCCGGTAACAA
ATCGAAAAAATTTTCGAACT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNMKIATRLSVFALAGALLAGCATQQGNNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLA
PSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFTPLLNDLATTLNQNPQVTASIVGYTDSTGSQQLNQTLSQNR
AQSVVNALVQRGVNGGRLSAQGMGPSNPIADNATEAGRAQNRRVEIYLRAPQQHQ

Sequences:

>Translated_215_residues
MNMKIATRLSVFALAGALLAGCATQQGNNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLA
PSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFTPLLNDLATTLNQNPQVTASIVGYTDSTGSQQLNQTLSQNR
AQSVVNALVQRGVNGGRLSAQGMGPSNPIADNATEAGRAQNRRVEIYLRAPQQHQ
>Mature_215_residues
MNMKIATRLSVFALAGALLAGCATQQGNNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLA
PSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFTPLLNDLATTLNQNPQVTASIVGYTDSTGSQQLNQTLSQNR
AQSVVNALVQRGVNGGRLSAQGMGPSNPIADNATEAGRAQNRRVEIYLRAPQQHQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=217, Percent_Identity=41.9354838709677, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1787191, Length=122, Percent_Identity=36.0655737704918, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788957, Length=117, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21657; Mature: 21657

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKIATRLSVFALAGALLAGCATQQGNNTAVGTGTGAALGAGIGALAGGGKGAAIGAGV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHCHHHHCCCCCCCCHHHHH
GALVGGVTGYNWQAIKNKLAPSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFT
HHHHHCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCEEEECCCCEEEECCCEEECCHHH
PLLNDLATTLNQNPQVTASIVGYTDSTGSQQLNQTLSQNRAQSVVNALVQRGVNGGRLSA
HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
QGMGPSNPIADNATEAGRAQNRRVEIYLRAPQQHQ
CCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MNMKIATRLSVFALAGALLAGCATQQGNNTAVGTGTGAALGAGIGALAGGGKGAAIGAGV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHCHHHHCCCCCCCCHHHHH
GALVGGVTGYNWQAIKNKLAPSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFT
HHHHHCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCEEEECCCCEEEECCCEEECCHHH
PLLNDLATTLNQNPQVTASIVGYTDSTGSQQLNQTLSQNRAQSVVNALVQRGVNGGRLSA
HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
QGMGPSNPIADNATEAGRAQNRRVEIYLRAPQQHQ
CCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]