| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is nap [H]
Identifier: 116690442
GI number: 116690442
Start: 2685920
End: 2687146
Strand: Direct
Name: nap [H]
Synonym: Bcen2424_2422
Alternate gene names: 116690442
Gene position: 2685920-2687146 (Clockwise)
Preceding gene: 116690441
Following gene: 116690446
Centisome position: 77.1
GC content: 71.15
Gene sequence:
>1227_bases ATGAGCGCAATCTTCAAGTCATCCCGCCATGCCCGCGCGATTCGCGCCGCGTACGCGGCCGCGCTGTCGCACTGGCCGGC CGGGCATCGGCGCGTCACCGTGCAAACGCGTCATGGCGCGACGCACGTCATCGCCTGCGGTCCCGAACACGCGCCGCCGG TCGTGCTGATCCACGGCGCACAGACGACGGCGGCAAGCTGGCAGCATCACGCGACCGACTGGGCGACGCACTTCCGGCTC TACGCGATCGACGTGATCGGCGAAGCGGGACCGAGCGCGCCGTCACGCCCGCCGCTCGCGGGCGACGCCCATGCGCAGTG GCTCGACGACGTGCTCGACGGCCTGCAGGTGTCGCGCGCCGCGTTCGTCGGCATCTCGCTCGGCGCGCGAACGGCGCTCG ACTTTGCGTTGCGGCGGCCGCCGCGCGTCACCCGGCTCGCGCTGCTCTGCCCGTCCGGCATCGGCAGGCAGAAGCCGTTT CTGTGGTGGGCGCTGCCGCTGTTGCTGCTCGGCGATGCCGGGCGCGCATGCGTGCGGCGGCGCGTGCTGGGTCGCCTGCC ACCCGCATCGACGCCGGCCGAACGGGACGCGCTCGCCCTGATGCGCGCCGTCGACCGCGGCTTCCGGCCGCGCATCGAGC CGATTCCGGTATTCGACGACACCATGCTCCGCACGTTGTCGATGCCCGTGCTGGCGATCGTCGGAGGCCGCGACGTGATG CTCGATTCCCGCGACACGCAGGATCGCCTGACGCGCCTCGTGCCGCACGCGCAGGTGCGGCTTCTTCCCGAGCAGCCTCA CTTCATCCGCGGGCAGCGCGACACCGTGCGCACTTTTCTCTCATCGACGGACACGCTCGACATGCCCCATCGAATCGTTC AGGCCGCCGGCAGCCGCGTGCTGGTCCGCGATCCTTCCGCCGGCCTCGTGCAACGGGAAAGCGACGCGCTCGATCTCGTC GCGCTCGCGCACGAGCATGAAGCCGACTGGATCGCGGTCGCGGCGGACACGCTGCACGACGACTTCTACCGGCTCGACAG CGGGCTGGCCGGCGCCGTGCTGCAAAAGCTGACCAACTACGGCGTCCGGCTCGGCGTGGTCGGCGACATCGACCGCCGGC TCGCGCGCAGCGAAGCGCTGCGCGCGCTCGTTCGCGAGTGCAATCGCGGAAAATCGGTCTGGTTCGTCGCGAGCGAGGAC GACCTGCTGCGCAGGCTCGGCGCGTAA
Upstream 100 bases:
>100_bases ATCCCGCCTCGAGCATGGTCAAGATCATCGTGACCGCGACACCGGCCGACACGGCCGCGCTGATGTCGTCGCTCGACATG CTGCTGCAGCAAAGCGGGAC
Downstream 100 bases:
>100_bases CGCGCTGCGGGCCGCCCCTGCCTCGCCACAGGCGAAAAAAAGCCCCGAAGGCCGATCGCCGTTCGGGGCTTTGTACGCAG CGCAGCTGCCGCGCAGCGTC
Product: alpha/beta hydrolase fold
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MSAIFKSSRHARAIRAAYAAALSHWPAGHRRVTVQTRHGATHVIACGPEHAPPVVLIHGAQTTAASWQHHATDWATHFRL YAIDVIGEAGPSAPSRPPLAGDAHAQWLDDVLDGLQVSRAAFVGISLGARTALDFALRRPPRVTRLALLCPSGIGRQKPF LWWALPLLLLGDAGRACVRRRVLGRLPPASTPAERDALALMRAVDRGFRPRIEPIPVFDDTMLRTLSMPVLAIVGGRDVM LDSRDTQDRLTRLVPHAQVRLLPEQPHFIRGQRDTVRTFLSSTDTLDMPHRIVQAAGSRVLVRDPSAGLVQRESDALDLV ALAHEHEADWIAVAADTLHDDFYRLDSGLAGAVLQKLTNYGVRLGVVGDIDRRLARSEALRALVRECNRGKSVWFVASED DLLRRLGA
Sequences:
>Translated_408_residues MSAIFKSSRHARAIRAAYAAALSHWPAGHRRVTVQTRHGATHVIACGPEHAPPVVLIHGAQTTAASWQHHATDWATHFRL YAIDVIGEAGPSAPSRPPLAGDAHAQWLDDVLDGLQVSRAAFVGISLGARTALDFALRRPPRVTRLALLCPSGIGRQKPF LWWALPLLLLGDAGRACVRRRVLGRLPPASTPAERDALALMRAVDRGFRPRIEPIPVFDDTMLRTLSMPVLAIVGGRDVM LDSRDTQDRLTRLVPHAQVRLLPEQPHFIRGQRDTVRTFLSSTDTLDMPHRIVQAAGSRVLVRDPSAGLVQRESDALDLV ALAHEHEADWIAVAADTLHDDFYRLDSGLAGAVLQKLTNYGVRLGVVGDIDRRLARSEALRALVRECNRGKSVWFVASED DLLRRLGA >Mature_407_residues SAIFKSSRHARAIRAAYAAALSHWPAGHRRVTVQTRHGATHVIACGPEHAPPVVLIHGAQTTAASWQHHATDWATHFRLY AIDVIGEAGPSAPSRPPLAGDAHAQWLDDVLDGLQVSRAAFVGISLGARTALDFALRRPPRVTRLALLCPSGIGRQKPFL WWALPLLLLGDAGRACVRRRVLGRLPPASTPAERDALALMRAVDRGFRPRIEPIPVFDDTMLRTLSMPVLAIVGGRDVML DSRDTQDRLTRLVPHAQVRLLPEQPHFIRGQRDTVRTFLSSTDTLDMPHRIVQAAGSRVLVRDPSAGLVQRESDALDLVA LAHEHEADWIAVAADTLHDDFYRLDSGLAGAVLQKLTNYGVRLGVVGDIDRRLARSEALRALVRECNRGKSVWFVASEDD LLRRLGA
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.1.1.1 [H]
Molecular weight: Translated: 44773; Mature: 44642
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAIFKSSRHARAIRAAYAAALSHWPAGHRRVTVQTRHGATHVIACGPEHAPPVVLIHGA CCCCHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEECC QTTAASWQHHATDWATHFRLYAIDVIGEAGPSAPSRPPLAGDAHAQWLDDVLDGLQVSRA CCCHHCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AFVGISLGARTALDFALRRPPRVTRLALLCPSGIGRQKPFLWWALPLLLLGDAGRACVRR HEEEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH RVLGRLPPASTPAERDALALMRAVDRGFRPRIEPIPVFDDTMLRTLSMPVLAIVGGRDVM HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCEEE LDSRDTQDRLTRLVPHAQVRLLPEQPHFIRGQRDTVRTFLSSTDTLDMPHRIVQAAGSRV ECCCCHHHHHHHHCCCCCEEECCCCCCHHCCCHHHHHHHHCCCCCCCHHHHHHHHCCCEE LVRDPSAGLVQRESDALDLVALAHEHEADWIAVAADTLHDDFYRLDSGLAGAVLQKLTNY EEECCCCCCEECCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHC GVRLGVVGDIDRRLARSEALRALVRECNRGKSVWFVASEDDLLRRLGA CEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC >Mature Secondary Structure SAIFKSSRHARAIRAAYAAALSHWPAGHRRVTVQTRHGATHVIACGPEHAPPVVLIHGA CCCHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEECC QTTAASWQHHATDWATHFRLYAIDVIGEAGPSAPSRPPLAGDAHAQWLDDVLDGLQVSRA CCCHHCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AFVGISLGARTALDFALRRPPRVTRLALLCPSGIGRQKPFLWWALPLLLLGDAGRACVRR HEEEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH RVLGRLPPASTPAERDALALMRAVDRGFRPRIEPIPVFDDTMLRTLSMPVLAIVGGRDVM HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCEEE LDSRDTQDRLTRLVPHAQVRLLPEQPHFIRGQRDTVRTFLSSTDTLDMPHRIVQAAGSRV ECCCCHHHHHHHHCCCCCEEECCCCCCHHCCCHHHHHHHHCCCCCCCHHHHHHHHCCCEE LVRDPSAGLVQRESDALDLVALAHEHEADWIAVAADTLHDDFYRLDSGLAGAVLQKLTNY EEECCCCCCEECCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHC GVRLGVVGDIDRRLARSEALRALVRECNRGKSVWFVASEDDLLRRLGA CEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]