| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690351
Identifier: 116690351
GI number: 116690351
Start: 2593681
End: 2594040
Strand: Reverse
Name: 116690351
Synonym: Bcen2424_2330
Alternate gene names: NA
Gene position: 2594040-2593681 (Counterclockwise)
Preceding gene: 116690352
Following gene: 116690349
Centisome position: 74.46
GC content: 63.06
Gene sequence:
>360_bases ATGAACAACGCATTCAAGACGGCGGCGGTTGCACTGGCGGCCGGCCTCGCGATCGGTACCGCGCACGCCGCGGACATCTC GAAGGGCAAGGAACTGGTCGAATCGCACAACTGCGCGGCCTGCCACGGCGCGCAGCTGAACAAGCCGATCAACGCGGAGT ACCCGCGCCTCGCCGGCCAGCACGCCGACTATCTCGTGTGGGCGATGCGCCAGTACCAGATGGGGCTGACGAACCCGCTG ATCGGCCGCAACAACGCGATCATGCAGGCGCAGGTACAGAACCTGTCGGTCAGCGACATGAAGGACATCGCGTCCTACAT CGAGTCGCTGAAGGAAACCGACCTCGTGTTCAAGAAGTAA
Upstream 100 bases:
>100_bases GATCTGTCGGCGTACTACGCCGCCCAGAAGGCCGACACGAAGGACAACCCCTACAAGTAAAGCGCGCGCCGCCGATCTCT CCGGCGGGACAGGAGCATTC
Downstream 100 bases:
>100_bases GCGCGACGGGCCTCACGGGCTCGCGCAGCAAGCTCACGGGCTCGCGCAGCAAGAATGCCCCGCCTCGGCGGGGTATTTTT TTGTCTGCGGCGCGGCTGTC
Product: cytochrome c, class I
Products: NA
Alternate protein names: Cytochrome; Cytochrome C Family Protein; Cytochrome C -Related Protein; Class I Cytochrome C; Cytochrome C-Type Protein; Cytochrome C Class IC; Cytochrome C; Periplasmic Cytochrome
Number of amino acids: Translated: 119; Mature: 119
Protein sequence:
>119_residues MNNAFKTAAVALAAGLAIGTAHAADISKGKELVESHNCAACHGAQLNKPINAEYPRLAGQHADYLVWAMRQYQMGLTNPL IGRNNAIMQAQVQNLSVSDMKDIASYIESLKETDLVFKK
Sequences:
>Translated_119_residues MNNAFKTAAVALAAGLAIGTAHAADISKGKELVESHNCAACHGAQLNKPINAEYPRLAGQHADYLVWAMRQYQMGLTNPL IGRNNAIMQAQVQNLSVSDMKDIASYIESLKETDLVFKK >Mature_119_residues MNNAFKTAAVALAAGLAIGTAHAADISKGKELVESHNCAACHGAQLNKPINAEYPRLAGQHADYLVWAMRQYQMGLTNPL IGRNNAIMQAQVQNLSVSDMKDIASYIESLKETDLVFKK
Specific function: Unknown
COG id: COG2863
COG function: function code C; Cytochrome c553
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12872; Mature: 12872
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNAFKTAAVALAAGLAIGTAHAADISKGKELVESHNCAACHGAQLNKPINAEYPRLAGQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC HADYLVWAMRQYQMGLTNPLIGRNNAIMQAQVQNLSVSDMKDIASYIESLKETDLVFKK CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNNAFKTAAVALAAGLAIGTAHAADISKGKELVESHNCAACHGAQLNKPINAEYPRLAGQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC HADYLVWAMRQYQMGLTNPLIGRNNAIMQAQVQNLSVSDMKDIASYIESLKETDLVFKK CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA