| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yfbI [C]
Identifier: 116690297
GI number: 116690297
Start: 2529449
End: 2531341
Strand: Direct
Name: yfbI [C]
Synonym: Bcen2424_2276
Alternate gene names: 116690297
Gene position: 2529449-2531341 (Clockwise)
Preceding gene: 116690296
Following gene: 116690314
Centisome position: 72.6
GC content: 70.89
Gene sequence:
>1893_bases ATGCCTGGAACCGCAGCGCCCAGCCGGCGACGCACGTCCGTGCCCGCCCCGGCCGCGCACACCCGCTCGACCGCCGATAC CGACGTCCTCGCGACGCTCGACGTGGCCGGTACGCCCGTCGCCGCCTCGACCGCCACGATCAGCGCCCCGCGCGACCGCT CGCTGCTGCTCGGCTGGCGCGCCTGGCTGTTCATCGCCGCACTGGTGTGCGCGTACACGCTGCCCGGTGTGCTCGGCCAC GACCCGTGGAAACAGGACGAAACCTACACGTTCGGCATCATCCAGCACATGCTCGAGACCGGCGACTTCGTCGTGCCGAC CAATGCCGGCCTGCCGTTCATGGAAAAGCCGCCGCTTTACGCGTGGGTCGCGACCAGCCTCGCGTGGCTGCTGCAGCGCG TGATGCCGCTGCACGACGCGGCGCGCCTGGCGAGCGCCCTGTTCGCCGCGCTCGCGTTCGGCTTCATCGCCCGCGCGGCC CGCGTGGCCAGTCGCGCGGATACCTGGTTCGACCTGCGCGTGCTCGGCCCGGTGGTACTCAGCGCCGGCACGCTCGTCGT CATCAAGCACGTGCACGACATGATGACGGACGTCGCGCTGTTTGCCGGCACGGCAATCGGGTTCTGCGGGCTGCTCGAAC TCGTGATGCAGCATGTCGCGCGGGCGCAGCAGATGCGGCACGGGCTGCCGGTGCATCCGGCGAGCCGCTGGGCCGCGCCG ATCTTCGGCGCGGGCGTCGGCATCGCGCTGATGGCGAAAGGGCTGTTCGTGCCGCTCGTGTTCGCGGCCACGCTCGTGTG CACGCTGGCGCTCTACCCGGCCTGCCGCACCCGCTCGTTCGCCCGCGCGCTGGGCGTCGCCGCACTCGTGTTCGCGCCGT TCGCGCTGATCTGGCCGACCGCGCTGTTCCTGCGCTCCGAAACGCTGTTCATGACGTGGTTCTGGGACAACAACGTCGGC CGCTTCTTCGGTTTCTCCGTGCCCGAACTGGGCGCGGAAAACGACAAGCCGTTCTTCATCCTGCGCGCGTTCCTCACCGT CGGCTTCCCGGTCGCGCCGCTCGCGATCGTCGCGCTCGCCCGTGGCGCATGGCGCGACTGGCGTGCGCCGCGCATCGCGC TGCCCGTGCTGTTCGCCGGCATCGGGCTCGTGGTGCTGCAGGTGTCCGCGACGTCGCGCCAGCTCTACATCCTGCCGTTC TTCGCGCCGCTCGCGCTGGTCGCCGCGCAGGCGATCGACCGCCTGCCGCGCCGGCTGCATCTCGCGTGGGATTACCTGAG CCGCATCCTGTTCGGCACGGTCGTCGTGCTCGCGTGGGCGATCTGGGCGGTGATGGCCGATCCGGCCGCGTCGCGCGCGG ATCTCGCGCTGCTCGGCCGCTGGCTGCCGCTCGACTGGACGATGCCGATCCAGCCCGCGCTCGTGACCGGCGCGCTCGCG CTGACGGTCGGCTGGCTGACACTGCTGCCGAAGCTGCGCACGACGGGCCTGTGGCGCGGCGCGCTGTCGTGGGGCGCCGG CGCGCTCGTCGCGTGGGGGCTCATCTATACGCTGCTGCTGCCGTGGCTCGACGTCGCGAAGAGCTACCGCTCGGTGTTCG ACGACCTGAACGCGCATCTCGCGCTCGAATGGAACGACGGCGACTGCATGGCGAGCCTGCACGGGCTCGGCGAATCGGAA GCGCCGATGCTGTACTACTTCTCCGGCATCGAGCACACGCCGATCGACGACGCGAAGACGACGCGCTGCACGTGGATGAT CGTCCAGGGCGTGCGGGCCGTCGATCCCGCGCCGGGCAGCGAATGGAAGCTGTTCTGGACGGGCGCCCGCCCGGGCGACA ACGAGGAACTGCTGCGCGTCTACGTGCGCACGCCCGAACCGCATCTGCAGTGA
Upstream 100 bases:
>100_bases AGACAGGTGTCTTAAACATCCTGTCCGTTAGCCGGATGTAATCCCTTATCGGTCCCGCCCATGTCGCCGGACCGGCTCGA CTCGACCCGAGATCTTTTCC
Downstream 100 bases:
>100_bases CACGGGGCGGCGCGATGCGCCGTCCTGCCCGCCTTCACTTTGCTCTTCGGCACCGGTCGCGCTCATCCGCTGGACCGCTG CGCAACCTGTGCTGCAATAC
Product: glycosyltransferase
Products: NA
Alternate protein names: Glycosyl Transferase Family Protein; Glycosyltransferase; Inner Membrane Protein; 4-Amino-4-Deoxy-L-Arabinose Transferase; Inner Membrane Transmembrane Protein; Glycosyltransferase Pmt Family
Number of amino acids: Translated: 630; Mature: 629
Protein sequence:
>630_residues MPGTAAPSRRRTSVPAPAAHTRSTADTDVLATLDVAGTPVAASTATISAPRDRSLLLGWRAWLFIAALVCAYTLPGVLGH DPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASALFAALAFGFIARAA RVASRADTWFDLRVLGPVVLSAGTLVVIKHVHDMMTDVALFAGTAIGFCGLLELVMQHVARAQQMRHGLPVHPASRWAAP IFGAGVGIALMAKGLFVPLVFAATLVCTLALYPACRTRSFARALGVAALVFAPFALIWPTALFLRSETLFMTWFWDNNVG RFFGFSVPELGAENDKPFFILRAFLTVGFPVAPLAIVALARGAWRDWRAPRIALPVLFAGIGLVVLQVSATSRQLYILPF FAPLALVAAQAIDRLPRRLHLAWDYLSRILFGTVVVLAWAIWAVMADPAASRADLALLGRWLPLDWTMPIQPALVTGALA LTVGWLTLLPKLRTTGLWRGALSWGAGALVAWGLIYTLLLPWLDVAKSYRSVFDDLNAHLALEWNDGDCMASLHGLGESE APMLYYFSGIEHTPIDDAKTTRCTWMIVQGVRAVDPAPGSEWKLFWTGARPGDNEELLRVYVRTPEPHLQ
Sequences:
>Translated_630_residues MPGTAAPSRRRTSVPAPAAHTRSTADTDVLATLDVAGTPVAASTATISAPRDRSLLLGWRAWLFIAALVCAYTLPGVLGH DPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASALFAALAFGFIARAA RVASRADTWFDLRVLGPVVLSAGTLVVIKHVHDMMTDVALFAGTAIGFCGLLELVMQHVARAQQMRHGLPVHPASRWAAP IFGAGVGIALMAKGLFVPLVFAATLVCTLALYPACRTRSFARALGVAALVFAPFALIWPTALFLRSETLFMTWFWDNNVG RFFGFSVPELGAENDKPFFILRAFLTVGFPVAPLAIVALARGAWRDWRAPRIALPVLFAGIGLVVLQVSATSRQLYILPF FAPLALVAAQAIDRLPRRLHLAWDYLSRILFGTVVVLAWAIWAVMADPAASRADLALLGRWLPLDWTMPIQPALVTGALA LTVGWLTLLPKLRTTGLWRGALSWGAGALVAWGLIYTLLLPWLDVAKSYRSVFDDLNAHLALEWNDGDCMASLHGLGESE APMLYYFSGIEHTPIDDAKTTRCTWMIVQGVRAVDPAPGSEWKLFWTGARPGDNEELLRVYVRTPEPHLQ >Mature_629_residues PGTAAPSRRRTSVPAPAAHTRSTADTDVLATLDVAGTPVAASTATISAPRDRSLLLGWRAWLFIAALVCAYTLPGVLGHD PWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLYAWVATSLAWLLQRVMPLHDAARLASALFAALAFGFIARAAR VASRADTWFDLRVLGPVVLSAGTLVVIKHVHDMMTDVALFAGTAIGFCGLLELVMQHVARAQQMRHGLPVHPASRWAAPI FGAGVGIALMAKGLFVPLVFAATLVCTLALYPACRTRSFARALGVAALVFAPFALIWPTALFLRSETLFMTWFWDNNVGR FFGFSVPELGAENDKPFFILRAFLTVGFPVAPLAIVALARGAWRDWRAPRIALPVLFAGIGLVVLQVSATSRQLYILPFF APLALVAAQAIDRLPRRLHLAWDYLSRILFGTVVVLAWAIWAVMADPAASRADLALLGRWLPLDWTMPIQPALVTGALAL TVGWLTLLPKLRTTGLWRGALSWGAGALVAWGLIYTLLLPWLDVAKSYRSVFDDLNAHLALEWNDGDCMASLHGLGESEA PMLYYFSGIEHTPIDDAKTTRCTWMIVQGVRAVDPAPGSEWKLFWTGARPGDNEELLRVYVRTPEPHLQ
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Integral membrane protein (Potential) [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68748; Mature: 68617
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGTAAPSRRRTSVPAPAAHTRSTADTDVLATLDVAGTPVAASTATISAPRDRSLLLGWR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHH AWLFIAALVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLY HHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCHH AWVATSLAWLLQRVMPLHDAARLASALFAALAFGFIARAARVASRADTWFDLRVLGPVVL HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH SAGTLVVIKHVHDMMTDVALFAGTAIGFCGLLELVMQHVARAQQMRHGLPVHPASRWAAP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC IFGAGVGIALMAKGLFVPLVFAATLVCTLALYPACRTRSFARALGVAALVFAPFALIWPT HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALFLRSETLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLTVGFPVAPLAIVALA HHHHCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH RGAWRDWRAPRIALPVLFAGIGLVVLQVSATSRQLYILPFFAPLALVAAQAIDRLPRRLH HCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHH LAWDYLSRILFGTVVVLAWAIWAVMADPAASRADLALLGRWLPLDWTMPIQPALVTGALA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHH LTVGWLTLLPKLRTTGLWRGALSWGAGALVAWGLIYTLLLPWLDVAKSYRSVFDDLNAHL HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE ALEWNDGDCMASLHGLGESEAPMLYYFSGIEHTPIDDAKTTRCTWMIVQGVRAVDPAPGS EEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHEECCHHHCCCCCCC EWKLFWTGARPGDNEELLRVYVRTPEPHLQ CEEEEECCCCCCCCHHEEEEEEECCCCCCC >Mature Secondary Structure PGTAAPSRRRTSVPAPAAHTRSTADTDVLATLDVAGTPVAASTATISAPRDRSLLLGWR CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHH AWLFIAALVCAYTLPGVLGHDPWKQDETYTFGIIQHMLETGDFVVPTNAGLPFMEKPPLY HHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCHH AWVATSLAWLLQRVMPLHDAARLASALFAALAFGFIARAARVASRADTWFDLRVLGPVVL HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH SAGTLVVIKHVHDMMTDVALFAGTAIGFCGLLELVMQHVARAQQMRHGLPVHPASRWAAP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC IFGAGVGIALMAKGLFVPLVFAATLVCTLALYPACRTRSFARALGVAALVFAPFALIWPT HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALFLRSETLFMTWFWDNNVGRFFGFSVPELGAENDKPFFILRAFLTVGFPVAPLAIVALA HHHHCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH RGAWRDWRAPRIALPVLFAGIGLVVLQVSATSRQLYILPFFAPLALVAAQAIDRLPRRLH HCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHH LAWDYLSRILFGTVVVLAWAIWAVMADPAASRADLALLGRWLPLDWTMPIQPALVTGALA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHH LTVGWLTLLPKLRTTGLWRGALSWGAGALVAWGLIYTLLLPWLDVAKSYRSVFDDLNAHL HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE ALEWNDGDCMASLHGLGESEAPMLYYFSGIEHTPIDDAKTTRCTWMIVQGVRAVDPAPGS EEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHEECCHHHCCCCCCC EWKLFWTGARPGDNEELLRVYVRTPEPHLQ CEEEEECCCCCCCCHHEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA