Click here to switch to the map view.

The map label for this gene is ltrA [H]

Identifier: 116690222

GI number: 116690222

Start: 2452083

End: 2453057

Strand: Reverse

Name: ltrA [H]

Synonym: Bcen2424_2201

Alternate gene names: 116690222

Gene position: 2453057-2452083 (Counterclockwise)

Preceding gene: 116690227

Following gene: 116690212

Centisome position: 70.41

GC content: 67.9

Gene sequence:

>975_bases
ATGAATATCGATGCACATAACCTGAACGACCTGATGTACTTCTCGCAGGTCGTCGAACATGGCGGCTTCTCGGCCGCCGA
GCGCGTGCTGGGCATCTCGAAATCGCGTCTGTCGCGACGCCTGACCGAGCTCGAGGCGGCGCTCGGCGTGCGCCTGCTGC
AGCGTTCGACGCGCAAGCTCGCGCTGACCGAGGCGGGGGAGTTGTTCTACCAGCATTGCCAGGCGATGCTCGCCGAAGCG
CAGGCCGCGATGAACGCGGTGCAGCAGTTGCGCGCGTCGCCACGCGGCTCGGTGCGCGTCAGCGTGCCGGTGACGCTGTC
GCAGACGATGCTGTCGCGCATCCTGCCCGAATTCCTGCGCCGCTATCCCGAGGTGAAGGTGCATGTCCGCGTGACGAATC
GCGTGATCGACCTGTTCGAGGATTCGATCGACGTCGCGTTGCGCGTGCGCTCCGAGCCGCCGCAGAACGCCAACATCGTC
GTGCGGCCGCTGTGGCGCACCGAGCAGATGCTGGTGGGCGCGCCGAGCCTGCTGAGCCAGAATGCGCCGCCGCTGGCGCC
GGACGACCTGACCGGCTTCGAGACGCTCGATACGCCGAGCGTCGACGGCCGGCACGTATTCAACCTGATCGCGCCGGATG
GAACGCGCCACGTGCACGAGCATGATCCGCGGCTCGTGACGGCCGACCTGATGACGATCCGCGAGGCCGTGCTCGATGGC
CTCGGCATCGCCGCGCTGCCGGAGATGATGTACGGCAACGCGCTGCGCGCGGGGCAACTGTCGCCCGTGATGCCGGGCTG
GACGCTGCCGGTGCCGCAGCTGTACGCGGTGTTCGTGTCGCGGCAGGGGATGCCGCCCGCGGTCCGTGCGTTCGTCGATT
ACCTGGTCGAGAAGCTCGACCATGGCGCGTACAAGGAGCCGGGTTGCCCCGAGCGCGCGAAGCAGGAAGCGGTGGCCGAT
GTTTCGGCGACCTGA

Upstream 100 bases:

>100_bases
GAATAGCGTTATTTTTGAAACATAGCGCTATTATATTGGGCGTTTTCCCGTCCGATTTGCGGCCGTTCGCAATGGATTGT
TCTGAAATTGGAACGATGAG

Downstream 100 bases:

>100_bases
ACACGGCGTGCACGACGACGCAAATTTGTTTTGTCATTGAAGCGTCGTCTGCAATCGCAAGTTTCAATCGCCGGAACCTT
GAATGCGTGCGCGGGCGGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTEAGELFYQHCQAMLAEA
QAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIV
VRPLWRTEQMLVGAPSLLSQNAPPLAPDDLTGFETLDTPSVDGRHVFNLIAPDGTRHVHEHDPRLVTADLMTIREAVLDG
LGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLDHGAYKEPGCPERAKQEAVAD
VSAT

Sequences:

>Translated_324_residues
MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTEAGELFYQHCQAMLAEA
QAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIV
VRPLWRTEQMLVGAPSLLSQNAPPLAPDDLTGFETLDTPSVDGRHVFNLIAPDGTRHVHEHDPRLVTADLMTIREAVLDG
LGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLDHGAYKEPGCPERAKQEAVAD
VSAT
>Mature_324_residues
MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKLALTEAGELFYQHCQAMLAEA
QAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLRRYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIV
VRPLWRTEQMLVGAPSLLSQNAPPLAPDDLTGFETLDTPSVDGRHVFNLIAPDGTRHVHEHDPRLVTADLMTIREAVLDG
LGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLDHGAYKEPGCPERAKQEAVAD
VSAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=32.9931972789116, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=31.5614617940199, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=26.8292682926829, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=27.681660899654, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=27.8350515463918, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=25.5172413793103, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=27.6094276094276, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1788481, Length=297, Percent_Identity=25.2525252525253, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=23.8372093023256, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789173, Length=292, Percent_Identity=23.972602739726, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790011, Length=303, Percent_Identity=21.1221122112211, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788297, Length=277, Percent_Identity=24.5487364620939, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788748, Length=121, Percent_Identity=32.2314049586777, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786448, Length=309, Percent_Identity=24.9190938511327, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI145693105, Length=252, Percent_Identity=25.3968253968254, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789506, Length=316, Percent_Identity=21.8354430379747, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788706, Length=151, Percent_Identity=27.1523178807947, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787879, Length=315, Percent_Identity=27.3015873015873, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35766; Mature: 35766

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHH
RYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ
HCCCEEEEEEEHHHHHHHHHHCHHEEEEECCCCCCCCCEEEEECCCCHHHHHCCHHHHCC
NAPPLAPDDLTGFETLDTPSVDGRHVFNLIAPDGTRHVHEHDPRLVTADLMTIREAVLDG
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHC
LGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLD
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
HGAYKEPGCPERAKQEAVADVSAT
CCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MNIDAHNLNDLMYFSQVVEHGGFSAAERVLGISKSRLSRRLTELEAALGVRLLQRSTRKL
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTEAGELFYQHCQAMLAEAQAAMNAVQQLRASPRGSVRVSVPVTLSQTMLSRILPEFLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHH
RYPEVKVHVRVTNRVIDLFEDSIDVALRVRSEPPQNANIVVRPLWRTEQMLVGAPSLLSQ
HCCCEEEEEEEHHHHHHHHHHCHHEEEEECCCCCCCCCEEEEECCCCHHHHHCCHHHHCC
NAPPLAPDDLTGFETLDTPSVDGRHVFNLIAPDGTRHVHEHDPRLVTADLMTIREAVLDG
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHC
LGIAALPEMMYGNALRAGQLSPVMPGWTLPVPQLYAVFVSRQGMPPAVRAFVDYLVEKLD
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
HGAYKEPGCPERAKQEAVADVSAT
CCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]