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The map label for this gene is ydcM [C]

Identifier: 116690049

GI number: 116690049

Start: 2251119

End: 2252171

Strand: Direct

Name: ydcM [C]

Synonym: Bcen2424_2028

Alternate gene names: 116690049

Gene position: 2251119-2252171 (Clockwise)

Preceding gene: 116690043

Following gene: 116690050

Centisome position: 64.61

GC content: 60.49

Gene sequence:

>1053_bases
ATGATCCTTGTCTACCGCTACCGGGTGAAGTCGCTCAACGGACTGCTTAACAAGCAGAGCCGCGCGGTGAACTACGTCTG
GAACTTCTGCAACGACACGCAGAAGCACGCGCTGAAGTGGAACAAGAAGTGGCCGACCGGTTTCGACTTGAATGTGCTCA
CGACTGGCAGCAGCAAGGCGCTCGGCATCCACTCCGGCACGATCAACGCGACGTGCGAGCAATACGCGAAGTCGCGCAGC
CAGCACCGTCGCCCGTACCTGCGCTATCGCGGCAGAAAATCGCTGGGCTGGGTGCCGCTGAAGGGCCGAGACCTGAAGCG
CGAGGGCGACGCGTTCCGTTTCGCCGGCAACACCTTCCGCGTGTTCAACAGTCGACCGCTTCCCGAAGGCAAGATCAAGG
ACGGCACCAACTTTGCGCAGGATGCGCGCGGCAACTGGTTTCTCAACATCGTGATCGAGATGCCGGATGTGCAGGCCCGC
CCGATCCGTTCCGGTGTCGGCATCGATCTCGGCCTGAAAGACTTCGCCACACTTTCGACCGGCGAGAAGCTGCCCAATGA
CCAGTTCGGTCGACGAGCGGCGGAAAAGCTGGCGAAAGCGCAACGGGCGCGCAAGCACAAGCGACATATCGCGAAGCTGC
ATGCCAAGGTCGCGAATGCGCGTGCCGATTTCCAGCACAAGCTCGCGCTCGATCTGGTGCGGCGTTTCGATTACATCGCG
GTCGGCAACGTGTCGGCCGCGAAATTTGCCAGAACCAGGATGGCGAAAAGCGTCTACGACGCGTCCTGGTCCTCCTTCCG
GAACAAGCTCCGCTACAAAGCGATCGCGCACGGGGCCACGTTCGAGGAAGTGGACGAAAGCGGTTCGACCCAGTCCTGTT
CGTCGTGCGGATCGAAAGACCGCACGACGCGGCCGAAAGGTATCGCGGGACTGAGAATAAGAGAATGGACCTGCAGTGAC
TGTGGTGTCGAACATGATCGTGATATCAACGCTGCGCTGAACATTCTCCGATGCGGACGTGCATCGCCAGGTGTGGGAAT
CCGCCGCCTTTAG

Upstream 100 bases:

>100_bases
TTGTTCATCAGAATTTGCTCCGAGAAACCCCGCCATTGATGGCGGGAAGGAAAGGCAGGCTGTTGACAGGCAGCTTCTTC
CACGGGTTAGGATCACCGGC

Downstream 100 bases:

>100_bases
GCGGACGAGGACGTCAATTGGTTCGATACCCTTTATTCGACCGGCCCGGCCGCCGCTCCGGCAGGCCGTGACCGCATTGC
GTCACGCTATAATCGTCCGT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWNKKWPTGFDLNVLTTGSSKALGIHSGTINATCEQYAKSRS
QHRRPYLRYRGRKSLGWVPLKGRDLKREGDAFRFAGNTFRVFNSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQAR
PIRSGVGIDLGLKDFATLSTGEKLPNDQFGRRAAEKLAKAQRARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYIA
VGNVSAAKFARTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSSCGSKDRTTRPKGIAGLRIREWTCSD
CGVEHDRDINAALNILRCGRASPGVGIRRL

Sequences:

>Translated_350_residues
MILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWNKKWPTGFDLNVLTTGSSKALGIHSGTINATCEQYAKSRS
QHRRPYLRYRGRKSLGWVPLKGRDLKREGDAFRFAGNTFRVFNSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQAR
PIRSGVGIDLGLKDFATLSTGEKLPNDQFGRRAAEKLAKAQRARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYIA
VGNVSAAKFARTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSSCGSKDRTTRPKGIAGLRIREWTCSD
CGVEHDRDINAALNILRCGRASPGVGIRRL
>Mature_350_residues
MILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWNKKWPTGFDLNVLTTGSSKALGIHSGTINATCEQYAKSRS
QHRRPYLRYRGRKSLGWVPLKGRDLKREGDAFRFAGNTFRVFNSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQAR
PIRSGVGIDLGLKDFATLSTGEKLPNDQFGRRAAEKLAKAQRARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYIA
VGNVSAAKFARTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSSCGSKDRTTRPKGIAGLRIREWTCSD
CGVEHDRDINAALNILRCGRASPGVGIRRL

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=257, Percent_Identity=27.2373540856031, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 39456; Mature: 39456

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWNKKWPTGFDLNVLTTGSSKA
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEEECCCCCE
LGIHSGTINATCEQYAKSRSQHRRPYLRYRGRKSLGWVPLKGRDLKREGDAFRFAGNTFR
EEEECCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCEECCCCCCCCCCCCEEEECCCEEE
VFNSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQARPIRSGVGIDLGLKDFATLST
EECCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCC
GEKLPNDQFGRRAAEKLAKAQRARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYIA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
VGNVSAAKFARTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSSCGSKD
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHCCCCC
RTTRPKGIAGLRIREWTCSDCGVEHDRDINAALNILRCGRASPGVGIRRL
CCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWNKKWPTGFDLNVLTTGSSKA
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEEECCCCCE
LGIHSGTINATCEQYAKSRSQHRRPYLRYRGRKSLGWVPLKGRDLKREGDAFRFAGNTFR
EEEECCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCEECCCCCCCCCCCCEEEECCCEEE
VFNSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQARPIRSGVGIDLGLKDFATLST
EECCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCC
GEKLPNDQFGRRAAEKLAKAQRARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYIA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
VGNVSAAKFARTRMAKSVYDASWSSFRNKLRYKAIAHGATFEEVDESGSTQSCSSCGSKD
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHCCCCC
RTTRPKGIAGLRIREWTCSDCGVEHDRDINAALNILRCGRASPGVGIRRL
CCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]