| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689908
Identifier: 116689908
GI number: 116689908
Start: 2092213
End: 2093388
Strand: Reverse
Name: 116689908
Synonym: Bcen2424_1887
Alternate gene names: NA
Gene position: 2093388-2092213 (Counterclockwise)
Preceding gene: 116689909
Following gene: 116689907
Centisome position: 60.09
GC content: 71.77
Gene sequence:
>1176_bases ATGACCGCGCTGAAGACGCTCGCCATCGCCAATTACCGCTCGCTGCGCGAGCTGATCGTGCCGCTCGCGGCGCTCAATGT CGTGACGGGGCCGAACGGCAGCGGCAAATCGAGCGTGTATCGCGCGCTGCGGCTGCTCGCCGACACCGCGCAGGGCCGCG TGATCCCGTCGCTCGCACGCGAGGGCGGCTTGCCGTCGACGTTGTGGGCCGGCCCCGAGCGCTTCTCGCGCGCGATGCTG GCGGGCGACGTGCCGGTGACGGGCACCGTGCGCAAGGGGCCGGTGAGCCTGAAGCTCGGCTTCGCGTGCGACGATTTCGG CTATGCGATCGATCTCGGCCTGCCGCTGCCGAGCCGCTCACAGTTCGCGCTCGATCCGGTGGTCAAGCGCGAATGCATCT GGGGCGGCGCGTTGCTGCGTCCGTCGACGCTGCTGGTCGACCGGCAGGGCGCGCAGATCCGTGCGCGTACCGCATCGGGC GACTGGCAGACGATTCCGCAGCCGGTCGCGAGCTTCGACAGCATGATGACCGAGTTCGCCGATCCGACCGGGGCGCCCGA GATGATCGCGGTGCGCGAACGGATTCGCTCGTGGCGCTTCTACGACCATTTCCGGACCGATGCGCAGGCGCCGGCACGCC AGTCGCACATCGGCACCCATACGCCGGTGCTCGCGGACGACGGGGCCGACCTGGCCGCCGCGCTGCAGACGATCCGCGAA ATCGGCGACGCGGCGGCGCTCGATGCGGCGATCGACGACGCGTTTCCCGGCGCGTCGGTCGAGATCGACAATCCGGGCGG CCGCGGCCGCTTCGACGTGCTGATGCGCCAGCCGGGGCTGCTGCGGCCGCTGGCGGCGGCCGAGCTGTCGGACGGCACGC TGCGCTACCTGCTGCTCGCGGCCGCGCTGCTGACGCCGCGGCCGCCGGCGCTGATGGTGCTGAACGAACCGGAGACGAGC CTGCATCCCGATCTGCTGCCGGCGCTCGGCCGCCTGATCGCGCAGGCCGCCCGGCGTTCGCAGGTGCTGGTCGTGTCGCA CGCGGCGCGGCTCATCGCGACGCTCGAGCGCGAGGCCGACTGCGAATCGCTGGTGCTCGACAAGCAGCTCGGCGCGACCG CGCTCGTCGATGCCGATTCGCGCGACCTGCCGCCCTGGAAGTGGCCATCGCGTTGA
Upstream 100 bases:
>100_bases CGCCGCCAGCACGGCGGCCAACACCGCAGCCGACCCGCAGGCCGTCGACGGCCGCTGAACGCGGCCCGAGTCCTGCGGCC ATTCCCTGTTTCCCATTGTC
Downstream 100 bases:
>100_bases CCGCCTGATTGCGTGCTCGAGGCCGTGAGCGGCGCCAGGAGGCGCCGAATGGGGCCGGCCGGGCGCGAAACGAGGCGTCC GCGCTCGATCGGCCGAATGT
Product: ATPase-like protein
Products: NA
Alternate protein names: SMC Domain-Containing Protein; ATPase-Like Protein; RecF Protein; ATPase RecF-Like Protein; RecF/RecN/SMC N Terminal Domain; RecF/RecN/SMC Domain-Containing Protein; Recf Like Family Protein; ATPase RecF-Like; DNA Replication And Repair Protein RecF; SMC Domain Protein
Number of amino acids: Translated: 391; Mature: 390
Protein sequence:
>391_residues MTALKTLAIANYRSLRELIVPLAALNVVTGPNGSGKSSVYRALRLLADTAQGRVIPSLAREGGLPSTLWAGPERFSRAML AGDVPVTGTVRKGPVSLKLGFACDDFGYAIDLGLPLPSRSQFALDPVVKRECIWGGALLRPSTLLVDRQGAQIRARTASG DWQTIPQPVASFDSMMTEFADPTGAPEMIAVRERIRSWRFYDHFRTDAQAPARQSHIGTHTPVLADDGADLAAALQTIRE IGDAAALDAAIDDAFPGASVEIDNPGGRGRFDVLMRQPGLLRPLAAAELSDGTLRYLLLAAALLTPRPPALMVLNEPETS LHPDLLPALGRLIAQAARRSQVLVVSHAARLIATLEREADCESLVLDKQLGATALVDADSRDLPPWKWPSR
Sequences:
>Translated_391_residues MTALKTLAIANYRSLRELIVPLAALNVVTGPNGSGKSSVYRALRLLADTAQGRVIPSLAREGGLPSTLWAGPERFSRAML AGDVPVTGTVRKGPVSLKLGFACDDFGYAIDLGLPLPSRSQFALDPVVKRECIWGGALLRPSTLLVDRQGAQIRARTASG DWQTIPQPVASFDSMMTEFADPTGAPEMIAVRERIRSWRFYDHFRTDAQAPARQSHIGTHTPVLADDGADLAAALQTIRE IGDAAALDAAIDDAFPGASVEIDNPGGRGRFDVLMRQPGLLRPLAAAELSDGTLRYLLLAAALLTPRPPALMVLNEPETS LHPDLLPALGRLIAQAARRSQVLVVSHAARLIATLEREADCESLVLDKQLGATALVDADSRDLPPWKWPSR >Mature_390_residues TALKTLAIANYRSLRELIVPLAALNVVTGPNGSGKSSVYRALRLLADTAQGRVIPSLAREGGLPSTLWAGPERFSRAMLA GDVPVTGTVRKGPVSLKLGFACDDFGYAIDLGLPLPSRSQFALDPVVKRECIWGGALLRPSTLLVDRQGAQIRARTASGD WQTIPQPVASFDSMMTEFADPTGAPEMIAVRERIRSWRFYDHFRTDAQAPARQSHIGTHTPVLADDGADLAAALQTIREI GDAAALDAAIDDAFPGASVEIDNPGGRGRFDVLMRQPGLLRPLAAAELSDGTLRYLLLAAALLTPRPPALMVLNEPETSL HPDLLPALGRLIAQAARRSQVLVVSHAARLIATLEREADCESLVLDKQLGATALVDADSRDLPPWKWPSR
Specific function: Unknown
COG id: COG4637
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41946; Mature: 41814
Theoretical pI: Translated: 7.05; Mature: 7.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALKTLAIANYRSLRELIVPLAALNVVTGPNGSGKSSVYRALRLLADTAQGRVIPSLAR CCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH EGGLPSTLWAGPERFSRAMLAGDVPVTGTVRKGPVSLKLGFACDDFGYAIDLGLPLPSRS CCCCCCHHHCCHHHHHHHHHCCCCCCCCCEECCCEEEEEEEEECCCCEEEEECCCCCCCC QFALDPVVKRECIWGGALLRPSTLLVDRQGAQIRARTASGDWQTIPQPVASFDSMMTEFA CCHHCHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC DPTGAPEMIAVRERIRSWRFYDHFRTDAQAPARQSHIGTHTPVLADDGADLAAALQTIRE CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCHHHHHHHHHHH IGDAAALDAAIDDAFPGASVEIDNPGGRGRFDVLMRQPGLLRPLAAAELSDGTLRYLLLA HCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHEECCCCCCCCHHHHHCCCCHHHHHHHH AALLTPRPPALMVLNEPETSLHPDLLPALGRLIAQAARRSQVLVVSHAARLIATLEREAD HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCC CESLVLDKQLGATALVDADSRDLPPWKWPSR HHHHHHHHHCCCEEEECCCCCCCCCCCCCCC >Mature Secondary Structure TALKTLAIANYRSLRELIVPLAALNVVTGPNGSGKSSVYRALRLLADTAQGRVIPSLAR CHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH EGGLPSTLWAGPERFSRAMLAGDVPVTGTVRKGPVSLKLGFACDDFGYAIDLGLPLPSRS CCCCCCHHHCCHHHHHHHHHCCCCCCCCCEECCCEEEEEEEEECCCCEEEEECCCCCCCC QFALDPVVKRECIWGGALLRPSTLLVDRQGAQIRARTASGDWQTIPQPVASFDSMMTEFA CCHHCHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC DPTGAPEMIAVRERIRSWRFYDHFRTDAQAPARQSHIGTHTPVLADDGADLAAALQTIRE CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCHHHHHHHHHHH IGDAAALDAAIDDAFPGASVEIDNPGGRGRFDVLMRQPGLLRPLAAAELSDGTLRYLLLA HCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHEECCCCCCCCHHHHHCCCCHHHHHHHH AALLTPRPPALMVLNEPETSLHPDLLPALGRLIAQAARRSQVLVVSHAARLIATLEREAD HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCC CESLVLDKQLGATALVDADSRDLPPWKWPSR HHHHHHHHHCCCEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA