| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is foxA [H]
Identifier: 116689369
GI number: 116689369
Start: 1484926
End: 1487016
Strand: Direct
Name: foxA [H]
Synonym: Bcen2424_1347
Alternate gene names: 116689369
Gene position: 1484926-1487016 (Clockwise)
Preceding gene: 116689367
Following gene: 116689370
Centisome position: 42.62
GC content: 69.73
Gene sequence:
>2091_bases ATGGCCACCACCGGCGCGCTGGCCGCCGAAGCTGCGGCGTCGGCGCCGGATGACCGGCACGCGCTGCCGGCGATCAACGT CACCGCGTCGTCCGCGCCGGCCGATCCGCTGACGCAACCGCTCGAAACGGGCTCGCGGCTCGGGCTTGCCAGTCTCGACA CGCCCGCGAGCGTCGAAACCGTCACGGCCGACACGATCGACGCACGCGGCGATCGCACGGTGCTCGACGCGGTCACGCGC ACGGCCGGCTTTGCGAGCGCGATCGCACCGGGCACCGGCGGCACCGCACTGAGCGTGCGCGGCTTCAGCGGGCAGGAATC GGTGATGACGCTGCTTGACGGCGTGCGGCTGATGCCGGCGGCCGGCACGATCACGTTTCCGTTCGACACGTGGTCGGTCG CGCGCATCGAGGTGCTGCGCGGCCCGGCATCGGTGCTGTACGGCGAAGGGGCGATCGGCGGAGTCGTGAACGTGGTGCCG AAGCGGCCGCAGCGCACGCGCGAGACGACGCTGCAGGCGGGCGTCGGCCCCGACGGCGCGAAGCGCTTCGCGTTCGATAC GACGGGCGCGCTCGGCCCGCGGCTGTCGTACCGCTTCTACGCAAGCGATGCGCGTGCGAACGGTCTCGCCGAGCGGGCCG ACACCCATACGACGGCCATCGGCGGCGCGCTGACATTCGACGTGAGCCCGCAGCTCACGCTGACGCTCGACTACGACTAC GGGCGCCAGATGCCGGCGACCTACTATGGCGTGCCGGCGCCGCACGGCGTGCTCGATCCGTCGCTGCGCAAGCTGAACTA CACGGTCGGCGACGCGACGATTTCGTACTACGACCAGTGGACGCGCCTGTCGGCCAGCTACCGGCCCGCGCCCGGCGTGA CGATCAGCAACCAGCTCTACTACCTGACATCGAACCGTCACTGGCGTAACGCCGAGTCATATGTGCTCGACCTCGCGACG GGACGCGTCACGCGCGGCGACTATCTCGACATCGGCCATCATCAGCGGCAGATCGGCGATCGGCTGAGCGCGCGTTTCGA CGGGATGCTGTTCGGTCGCGCGAACCGTTTCGTCGTCGGCACGGAATTCAGCCAGATCACGTTCAGCGGTACCAACAATT CGCCGTATGGTGGCGAAACGACGGTGCCCGCGCACGGCTTCGATCCTGGTGTGTTCACGAGCCCGGACCCGACCGTGCCG CAATTCAGCACGCGCGCACGGCAGGCGGCGGTATTCGCGGAGAACCGGCTCGAGGTGCTGCCGCGGCTCGCGTGGGTGAG CGGGCTGCGCTACGACCACATCGCGTTCAGTCGCGAGCAGGCGGCGACCGGCGCGGGCTTCGACAAGCGGTTCGCGAACG TCGGCTGGCGCACCGGTGTCGTGTTCGATATCGCGCCGGCGTTCACCGCCTATGCGCAGTACACGACGGGCGCGGAGGGC GTCGGCTCGCTCGTGACGCTGTCCGCGTCGCAGATGAACGTCCGGCTCGCGACCGGCGAACAGTGGGAAGCCGGGCTCAA GCAGACGCTGCTCGACGGGCGCGCGTACTGGACGGTCGCGGTGTACGACATCACGAAGCGCAACCTGCTCAGCACCGATC CGTTCAATCCGGCGCTGCGCCAGCAGGTCGGCCGGCAGTCGTCGCGCGGCGTCGATCTGACCGGCGGCGCGCGGCTGTCG CACGGCTGGACGATCGATGCGAACGTCGCGTTGCTGCGTGCGCGCTACGACGCATTCAACCAGACGGTCGGCGGCGCGAC GGTGTCGCGGGCCGGCAACGTGCCGTCGGGCGTGCCGCAGCAGACCGCGAACCTGTGGCTCGGCTGGGCATTCGCCGAGC GCTGGCACGTGAATGCGGGCGTGCGTTACGTCGGCGCGACCTACGGCGACGATGCGAATCGCGTGCGGGTGCCGTCGTAT ACGGTGTTCGATGCGTCGCTGCGCTGGCAGCCGACGTCGCGCACCGAGCTCGCGCTGTATCTGCGCAATCTCGCGAACCG CACGTATGCGGTAACGACGTCGAACGGCGGCGAGCAATGGCTGCTCGGCCCGTCGCGCTCGGCGGAGCTCGTCGCGACGA TGCGCTTCTAG
Upstream 100 bases:
>100_bases CCCGGCGCGCGGGGCGCGGCGCCATGCCGCGCCGCGCCGGAACACGGGCGCCTGGCGCGCATGCGCGGCACGCAGTTGCA CGACCTTGCTGGGCTGCGCG
Downstream 100 bases:
>100_bases GGCGGCACGACATGCGTCCCGTCAAACACATGCTCGACATCGAACGCGTGAGCTGGTCTCCCGGCGGCGCGGTCGACGTG CTCGATTCGGTGACGCTGAC
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 696; Mature: 695
Protein sequence:
>696_residues MATTGALAAEAAASAPDDRHALPAINVTASSAPADPLTQPLETGSRLGLASLDTPASVETVTADTIDARGDRTVLDAVTR TAGFASAIAPGTGGTALSVRGFSGQESVMTLLDGVRLMPAAGTITFPFDTWSVARIEVLRGPASVLYGEGAIGGVVNVVP KRPQRTRETTLQAGVGPDGAKRFAFDTTGALGPRLSYRFYASDARANGLAERADTHTTAIGGALTFDVSPQLTLTLDYDY GRQMPATYYGVPAPHGVLDPSLRKLNYTVGDATISYYDQWTRLSASYRPAPGVTISNQLYYLTSNRHWRNAESYVLDLAT GRVTRGDYLDIGHHQRQIGDRLSARFDGMLFGRANRFVVGTEFSQITFSGTNNSPYGGETTVPAHGFDPGVFTSPDPTVP QFSTRARQAAVFAENRLEVLPRLAWVSGLRYDHIAFSREQAATGAGFDKRFANVGWRTGVVFDIAPAFTAYAQYTTGAEG VGSLVTLSASQMNVRLATGEQWEAGLKQTLLDGRAYWTVAVYDITKRNLLSTDPFNPALRQQVGRQSSRGVDLTGGARLS HGWTIDANVALLRARYDAFNQTVGGATVSRAGNVPSGVPQQTANLWLGWAFAERWHVNAGVRYVGATYGDDANRVRVPSY TVFDASLRWQPTSRTELALYLRNLANRTYAVTTSNGGEQWLLGPSRSAELVATMRF
Sequences:
>Translated_696_residues MATTGALAAEAAASAPDDRHALPAINVTASSAPADPLTQPLETGSRLGLASLDTPASVETVTADTIDARGDRTVLDAVTR TAGFASAIAPGTGGTALSVRGFSGQESVMTLLDGVRLMPAAGTITFPFDTWSVARIEVLRGPASVLYGEGAIGGVVNVVP KRPQRTRETTLQAGVGPDGAKRFAFDTTGALGPRLSYRFYASDARANGLAERADTHTTAIGGALTFDVSPQLTLTLDYDY GRQMPATYYGVPAPHGVLDPSLRKLNYTVGDATISYYDQWTRLSASYRPAPGVTISNQLYYLTSNRHWRNAESYVLDLAT GRVTRGDYLDIGHHQRQIGDRLSARFDGMLFGRANRFVVGTEFSQITFSGTNNSPYGGETTVPAHGFDPGVFTSPDPTVP QFSTRARQAAVFAENRLEVLPRLAWVSGLRYDHIAFSREQAATGAGFDKRFANVGWRTGVVFDIAPAFTAYAQYTTGAEG VGSLVTLSASQMNVRLATGEQWEAGLKQTLLDGRAYWTVAVYDITKRNLLSTDPFNPALRQQVGRQSSRGVDLTGGARLS HGWTIDANVALLRARYDAFNQTVGGATVSRAGNVPSGVPQQTANLWLGWAFAERWHVNAGVRYVGATYGDDANRVRVPSY TVFDASLRWQPTSRTELALYLRNLANRTYAVTTSNGGEQWLLGPSRSAELVATMRF >Mature_695_residues ATTGALAAEAAASAPDDRHALPAINVTASSAPADPLTQPLETGSRLGLASLDTPASVETVTADTIDARGDRTVLDAVTRT AGFASAIAPGTGGTALSVRGFSGQESVMTLLDGVRLMPAAGTITFPFDTWSVARIEVLRGPASVLYGEGAIGGVVNVVPK RPQRTRETTLQAGVGPDGAKRFAFDTTGALGPRLSYRFYASDARANGLAERADTHTTAIGGALTFDVSPQLTLTLDYDYG RQMPATYYGVPAPHGVLDPSLRKLNYTVGDATISYYDQWTRLSASYRPAPGVTISNQLYYLTSNRHWRNAESYVLDLATG RVTRGDYLDIGHHQRQIGDRLSARFDGMLFGRANRFVVGTEFSQITFSGTNNSPYGGETTVPAHGFDPGVFTSPDPTVPQ FSTRARQAAVFAENRLEVLPRLAWVSGLRYDHIAFSREQAATGAGFDKRFANVGWRTGVVFDIAPAFTAYAQYTTGAEGV GSLVTLSASQMNVRLATGEQWEAGLKQTLLDGRAYWTVAVYDITKRNLLSTDPFNPALRQQVGRQSSRGVDLTGGARLSH GWTIDANVALLRARYDAFNQTVGGATVSRAGNVPSGVPQQTANLWLGWAFAERWHVNAGVRYVGATYGDDANRVRVPSYT VFDASLRWQPTSRTELALYLRNLANRTYAVTTSNGGEQWLLGPSRSAELVATMRF
Specific function: Ferrioxamine binding and uptake, in association with the tonB protein [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=757, Percent_Identity=25.4953764861295, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1786798, Length=426, Percent_Identity=26.2910798122066, Blast_Score=72, Evalue=8e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 74813; Mature: 74682
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATTGALAAEAAASAPDDRHALPAINVTASSAPADPLTQPLETGSRLGLASLDTPASVET CCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCEEE VTADTIDARGDRTVLDAVTRTAGFASAIAPGTGGTALSVRGFSGQESVMTLLDGVRLMPA EEECCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCEEECC AGTITFPFDTWSVARIEVLRGPASVLYGEGAIGGVVNVVPKRPQRTRETTLQAGVGPDGA CCEEEECCCCCCEEEEEEECCCHHEEECCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCC KRFAFDTTGALGPRLSYRFYASDARANGLAERADTHTTAIGGALTFDVSPQLTLTLDYDY CEEEEECCCCCCCCEEEEEEECCCCCCCCHHHCCCCCEEECCEEEEECCCCEEEEEECCC GRQMPATYYGVPAPHGVLDPSLRKLNYTVGDATISYYDQWTRLSASYRPAPGVTISNQLY CCCCCCEEECCCCCCCCCCCCHHHEEEEECCCEEEEHHHHHHCCCCCCCCCCCEECCEEE YLTSNRHWRNAESYVLDLATGRVTRGDYLDIGHHQRQIGDRLSARFDGMLFGRANRFVVG EEECCCCCCCCCCEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHCCEEEECCCEEEEE TEFSQITFSGTNNSPYGGETTVPAHGFDPGVFTSPDPTVPQFSTRARQAAVFAENRLEVL CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH PRLAWVSGLRYDHIAFSREQAATGAGFDKRFANVGWRTGVVFDIAPAFTAYAQYTTGAEG HHHHHHHCCCCHHEEECHHHHCCCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCC VGSLVTLSASQMNVRLATGEQWEAGLKQTLLDGRAYWTVAVYDITKRNLLSTDPFNPALR CCCEEEEEECCEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCHHHH QQVGRQSSRGVDLTGGARLSHGWTIDANVALLRARYDAFNQTVGGATVSRAGNVPSGVPQ HHHCCCCCCCEEECCCCEECCCEEEECCEEEEEEHHHHHHHCCCCCCHHCCCCCCCCCCC QTANLWLGWAFAERWHVNAGVRYVGATYGDDANRVRVPSYTVFDASLRWQPTSRTELALY HHHHEEEEEEEHEEEEECCCEEEEEEEECCCCCEEECCEEEEEECEEEECCCCCHHHHHH LRNLANRTYAVTTSNGGEQWLLGPSRSAELVATMRF HHHHCCCEEEEEECCCCCEEEECCCCCCEEEEEECC >Mature Secondary Structure ATTGALAAEAAASAPDDRHALPAINVTASSAPADPLTQPLETGSRLGLASLDTPASVET CCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCEEE VTADTIDARGDRTVLDAVTRTAGFASAIAPGTGGTALSVRGFSGQESVMTLLDGVRLMPA EEECCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCEEEEECCCCHHHHHHHHCCCEEECC AGTITFPFDTWSVARIEVLRGPASVLYGEGAIGGVVNVVPKRPQRTRETTLQAGVGPDGA CCEEEECCCCCCEEEEEEECCCHHEEECCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCC KRFAFDTTGALGPRLSYRFYASDARANGLAERADTHTTAIGGALTFDVSPQLTLTLDYDY CEEEEECCCCCCCCEEEEEEECCCCCCCCHHHCCCCCEEECCEEEEECCCCEEEEEECCC GRQMPATYYGVPAPHGVLDPSLRKLNYTVGDATISYYDQWTRLSASYRPAPGVTISNQLY CCCCCCEEECCCCCCCCCCCCHHHEEEEECCCEEEEHHHHHHCCCCCCCCCCCEECCEEE YLTSNRHWRNAESYVLDLATGRVTRGDYLDIGHHQRQIGDRLSARFDGMLFGRANRFVVG EEECCCCCCCCCCEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHCCEEEECCCEEEEE TEFSQITFSGTNNSPYGGETTVPAHGFDPGVFTSPDPTVPQFSTRARQAAVFAENRLEVL CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH PRLAWVSGLRYDHIAFSREQAATGAGFDKRFANVGWRTGVVFDIAPAFTAYAQYTTGAEG HHHHHHHCCCCHHEEECHHHHCCCCCHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCC VGSLVTLSASQMNVRLATGEQWEAGLKQTLLDGRAYWTVAVYDITKRNLLSTDPFNPALR CCCEEEEEECCEEEEEECCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCHHHH QQVGRQSSRGVDLTGGARLSHGWTIDANVALLRARYDAFNQTVGGATVSRAGNVPSGVPQ HHHCCCCCCCEEECCCCEECCCEEEECCEEEEEEHHHHHHHCCCCCCHHCCCCCCCCCCC QTANLWLGWAFAERWHVNAGVRYVGATYGDDANRVRVPSYTVFDASLRWQPTSRTELALY HHHHEEEEEEEHEEEEECCCEEEEEEEECCCCCEEECCEEEEEECEEEECCCCCHHHHHH LRNLANRTYAVTTSNGGEQWLLGPSRSAELVATMRF HHHHCCCEEEEEECCCCCEEEECCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1640832 [H]