| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689290
Identifier: 116689290
GI number: 116689290
Start: 1399114
End: 1399881
Strand: Direct
Name: 116689290
Synonym: Bcen2424_1268
Alternate gene names: NA
Gene position: 1399114-1399881 (Clockwise)
Preceding gene: 116689289
Following gene: 116689291
Centisome position: 40.16
GC content: 69.66
Gene sequence:
>768_bases ATGCTGCAGATGCTCGAAAAAACCGTCGCCCACAACGGGCTCGTCGCGTCGTTCGCGCTGGTCGGCCTGATCATGTGGCT GTCGTCGATCGCGTCGCGCAAGCTCACGTTCGGCCGCGTGCACGGCTCGGCGATCGCGATCGTCATCGGTCTCGTGCTCG CCTACGTCGGCGGCGCATTCACCGGCGGCGAGAAGGGGCTGGCCGACGTCAAGCTGTTCGCCGGTATCGGCCTGATGGGC GGCGCGATGCTGCGCGATTTCGCGATCGTCGCGACCGCGTTCGAAGTACAGCCGACCGAGGCGCGCAAGGCCGGGCTCGT CGGCGTCGTGTCGCTGCTGCTCGGCACCGTGCTGCCGTTCATCGTCGGCGCGTGCGTCGCGCGCGCGTTCGGCTACACCG ACGCGGTCAGCATGACGACGATCGGCGCGGGCGCCGTCACCTATATCGTCGGGCCCGTTACGGGCGCGGCGATCGGTGCG AGCTCCGACGTGATCGCGCTCAGCATCGCGACCGGGCTCGTGAAGGCGATCATCGTGATGGTCGGCACGCCGGTCGCGGC CAACTTCATGGGCCTGAAAACGCCGCGCTCCGCGATGATCTTCGGCGGGCTGGCCGGCACCGTCAGCGGCGTGAGCGCGG GCCTTGCCGCGACCGATCGCCGGCTCGTGCCGTACGGTGCGCTGGTCGCGACGTTCCATACCGGCGTCGGCTGCCTGCTC GGGCCGTCGGTACTGTTCTTCACGACGCGCGCGCTGGTCGGCGCGTAG
Upstream 100 bases:
>100_bases CGATCTGCGCATGCTGCATTGCGGTACTCGCGCGCACGGGGCGCGACGACACGGCCTTCGCGGGCGTGCCGCAATTCGAA GAACAATAACGGAGGCCGCC
Downstream 100 bases:
>100_bases GGCCCTGCGACGCGGCCCGCGCGCGGGCCGCATCCATCGCCGCGTCCTCTGAGTCGCATTCTGCAACATCATCAATCGGC GGCGGCGCCAGGCTTAGAAT
Product: malonate transporter, MadM subunit
Products: NA
Alternate protein names: Malonate/Sodium Symporter MadM Subunit; Malonate Transporter; Malonate Transporter Subunit MadM; MalonateSodium Symporter Subunit MadM; Malonate Transporter-Like Membrane Protein; Facilitator Superfamily Transporter; Malonate Transporter M Subunit; Signal Transduction Histidine Kinase LytS
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MLQMLEKTVAHNGLVASFALVGLIMWLSSIASRKLTFGRVHGSAIAIVIGLVLAYVGGAFTGGEKGLADVKLFAGIGLMG GAMLRDFAIVATAFEVQPTEARKAGLVGVVSLLLGTVLPFIVGACVARAFGYTDAVSMTTIGAGAVTYIVGPVTGAAIGA SSDVIALSIATGLVKAIIVMVGTPVAANFMGLKTPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGVGCLL GPSVLFFTTRALVGA
Sequences:
>Translated_255_residues MLQMLEKTVAHNGLVASFALVGLIMWLSSIASRKLTFGRVHGSAIAIVIGLVLAYVGGAFTGGEKGLADVKLFAGIGLMG GAMLRDFAIVATAFEVQPTEARKAGLVGVVSLLLGTVLPFIVGACVARAFGYTDAVSMTTIGAGAVTYIVGPVTGAAIGA SSDVIALSIATGLVKAIIVMVGTPVAANFMGLKTPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGVGCLL GPSVLFFTTRALVGA >Mature_255_residues MLQMLEKTVAHNGLVASFALVGLIMWLSSIASRKLTFGRVHGSAIAIVIGLVLAYVGGAFTGGEKGLADVKLFAGIGLMG GAMLRDFAIVATAFEVQPTEARKAGLVGVVSLLLGTVLPFIVGACVARAFGYTDAVSMTTIGAGAVTYIVGPVTGAAIGA SSDVIALSIATGLVKAIIVMVGTPVAANFMGLKTPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGVGCLL GPSVLFFTTRALVGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25517; Mature: 25517
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQMLEKTVAHNGLVASFALVGLIMWLSSIASRKLTFGRVHGSAIAIVIGLVLAYVGGAF CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCC TGGEKGLADVKLFAGIGLMGGAMLRDFAIVATAFEVQPTEARKAGLVGVVSLLLGTVLPF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHH IVGACVARAFGYTDAVSMTTIGAGAVTYIVGPVTGAAIGASSDVIALSIATGLVKAIIVM HHHHHHHHHHCCCCHHHHHHCCCCHHHHEECCCCCHHCCCCCCCHHHHHHHHHHHHHHHH VGTPVAANFMGLKTPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGVGCLL HCCCHHHHHHCCCCCCHHHEECCHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHCCHHHH GPSVLFFTTRALVGA CCHHHHHHHHHHHCC >Mature Secondary Structure MLQMLEKTVAHNGLVASFALVGLIMWLSSIASRKLTFGRVHGSAIAIVIGLVLAYVGGAF CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCC TGGEKGLADVKLFAGIGLMGGAMLRDFAIVATAFEVQPTEARKAGLVGVVSLLLGTVLPF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHH IVGACVARAFGYTDAVSMTTIGAGAVTYIVGPVTGAAIGASSDVIALSIATGLVKAIIVM HHHHHHHHHHCCCCHHHHHHCCCCHHHHEECCCCCHHCCCCCCCHHHHHHHHHHHHHHHH VGTPVAANFMGLKTPRSAMIFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGVGCLL HCCCHHHHHHCCCCCCHHHEECCHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHCCHHHH GPSVLFFTTRALVGA CCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA