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The map label for this gene is yraR [H]

Identifier: 116689269

GI number: 116689269

Start: 1378553

End: 1379248

Strand: Direct

Name: yraR [H]

Synonym: Bcen2424_1247

Alternate gene names: 116689269

Gene position: 1378553-1379248 (Clockwise)

Preceding gene: 116689268

Following gene: 116689270

Centisome position: 39.57

GC content: 70.11

Gene sequence:

>696_bases
ATGTCGATAGCCGGAAACCGGGCTGCCTCGGCCCGCCAACGCAGGCTTCACACGGAACAACCGGACATGAAACTGCTGCT
CGTCGGCGCGACCGGACTCGTCGGGCGCCACGTCCTCGAAGTTGCGCTCGCCGACGCGCGGGTCGATCAGGTGATCGTCC
TCGCGCGCCGGCCGTTGTCGCCGCATCCGAAGATGCGCGCGCTGGAAGTCTATTTCGACCATCTGCCCGACACGGCGGAC
TGGTGGCACGCGGATGCCGTGATCTGCACGCTCGGCACGACGATGCGGGCCGCCGGTTCGCAGGCGGCCTTCCGGCGCGT
CGATCACGACTATCCGCTTGCGGTCGCGCGGCTCGCGCACCGGCACGGCACGCCGGCCTACGTGCTGAATTCCGCGCTCG
GCGCCGATGCCGGGTCGCGCATCTTTTACAACCGCGTGAAGGGCGAAGTCGAGCAGGCGCTCGCCGGCGTCGGCTTCGAT
TCGCTCACGTACGTGCGACCGGGCCTGATCGGCGGCAGCCGCGACGAGTTCCGGTTCGGCGAGCGGCTGTTCGTGTTCGC
GCTGAGCGCCGTCGCGCCGGTGCTCCCGGCGAAATGGCGTGTGAACCCGGCGCCGCGGATTGCGCGCGCGTTGCTCGACG
CGGCGATCGACGCACGGTCGGGCGTGCAGGTCGTCGCGTCCGACCGGCTCGTCTGA

Upstream 100 bases:

>100_bases
CCGGGGCCGGGTCGCATTCGATCGCCCGGAACGGCGCCTGACAGGCCCGTAATTTTTCGAGACGAGGGGAGGGTTGCCGC
CGCCACGTCGGCCGACGATC

Downstream 100 bases:

>100_bases
TGCGGTGCGGGCGGTGCGCTCGCCGGGTTATTCGTCCGTGCTTCCCCTGCAGTGACGGCTGCGCCCGATCGCCCCCCTCG
GGTTGACCCAACTTTCATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSIAGNRAASARQRRLHTEQPDMKLLLVGATGLVGRHVLEVALADARVDQVIVLARRPLSPHPKMRALEVYFDHLPDTAD
WWHADAVICTLGTTMRAAGSQAAFRRVDHDYPLAVARLAHRHGTPAYVLNSALGADAGSRIFYNRVKGEVEQALAGVGFD
SLTYVRPGLIGGSRDEFRFGERLFVFALSAVAPVLPAKWRVNPAPRIARALLDAAIDARSGVQVVASDRLV

Sequences:

>Translated_231_residues
MSIAGNRAASARQRRLHTEQPDMKLLLVGATGLVGRHVLEVALADARVDQVIVLARRPLSPHPKMRALEVYFDHLPDTAD
WWHADAVICTLGTTMRAAGSQAAFRRVDHDYPLAVARLAHRHGTPAYVLNSALGADAGSRIFYNRVKGEVEQALAGVGFD
SLTYVRPGLIGGSRDEFRFGERLFVFALSAVAPVLPAKWRVNPAPRIARALLDAAIDARSGVQVVASDRLV
>Mature_230_residues
SIAGNRAASARQRRLHTEQPDMKLLLVGATGLVGRHVLEVALADARVDQVIVLARRPLSPHPKMRALEVYFDHLPDTADW
WHADAVICTLGTTMRAAGSQAAFRRVDHDYPLAVARLAHRHGTPAYVLNSALGADAGSRIFYNRVKGEVEQALAGVGFDS
LTYVRPGLIGGSRDEFRFGERLFVFALSAVAPVLPAKWRVNPAPRIARALLDAAIDARSGVQVVASDRLV

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=206, Percent_Identity=32.5242718446602, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI148728168, Length=206, Percent_Identity=32.5242718446602, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI148728164, Length=206, Percent_Identity=32.5242718446602, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI148728166, Length=206, Percent_Identity=32.5242718446602, Blast_Score=90, Evalue=1e-18,
Organism=Escherichia coli, GI87082218, Length=213, Percent_Identity=35.2112676056338, Blast_Score=115, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71983631, Length=210, Percent_Identity=36.1904761904762, Blast_Score=128, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 25100; Mature: 24969

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAGNRAASARQRRLHTEQPDMKLLLVGATGLVGRHVLEVALADARVDQVIVLARRPLS
CCCCCCCHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEECCCCC
PHPKMRALEVYFDHLPDTADWWHADAVICTLGTTMRAAGSQAAFRRVDHDYPLAVARLAH
CCCCHHHHHHHHHHCCCCCCHHHHCEEEEECCCHHHHCCCHHHHHHCCCCCCHHHHHHHH
RHGTPAYVLNSALGADAGSRIFYNRVKGEVEQALAGVGFDSLTYVRPGLIGGSRDEFRFG
HCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHH
ERLFVFALSAVAPVLPAKWRVNPAPRIARALLDAAIDARSGVQVVASDRLV
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCC
>Mature Secondary Structure 
SIAGNRAASARQRRLHTEQPDMKLLLVGATGLVGRHVLEVALADARVDQVIVLARRPLS
CCCCCCHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEECCCCC
PHPKMRALEVYFDHLPDTADWWHADAVICTLGTTMRAAGSQAAFRRVDHDYPLAVARLAH
CCCCHHHHHHHHHHCCCCCCHHHHCEEEEECCCHHHHCCCHHHHHHCCCCCCHHHHHHHH
RHGTPAYVLNSALGADAGSRIFYNRVKGEVEQALAGVGFDSLTYVRPGLIGGSRDEFRFG
HCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHH
ERLFVFALSAVAPVLPAKWRVNPAPRIARALLDAAIDARSGVQVVASDRLV
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]