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The map label for this gene is recD [H]

Identifier: 116689238

GI number: 116689238

Start: 1345934

End: 1348252

Strand: Direct

Name: recD [H]

Synonym: Bcen2424_1216

Alternate gene names: 116689238

Gene position: 1345934-1348252 (Clockwise)

Preceding gene: 116689237

Following gene: 116689239

Centisome position: 38.63

GC content: 73.35

Gene sequence:

>2319_bases
ATGACCGCATCCGACGACATGCTCGAATTCACCGGCGGTCTCGTCGCGCGGCTGCCCGAGCCGGCCGATTTCGGCATTGC
GCTCGCGGAAGGCTTCGCGCGCCGCATCGGTGACCTCGCGCGACGTGCCGGTGCGCCGTCCGCGTCGGCACGCTGGGCGG
CGCGTGCCGCGTTCGCGACGAGCCGCGCGACCGCGAGCGGCCACGTGTGCGTTGCGCTCGGCGCGCTTGCACAGCGTTAC
GAAGCGCCGCTCGACGAGGTCCGCGCGGCGCTTGCCGCGAGCGGCGTGGTCGCGTTCGGCACGCTCGCGCGCGGCGACGA
ACGGCCGCTGATCGTCGACCGGCTCGATCACCTGTACCTGTCGCGCTATTTCGATTACGAACGGCGGCTCGCCGATGCGC
TCGTCGCGCAGGCCGGCGTCGCCGCGCCGGACGAAGGACTGTCGCCCGACCGGTTGCGCGACAGTCTCGCCCGTTACTTC
GGGCCGGCCACCGGTGAAGTCGACTGGCAGCGCGTCGCGGCGATCGTCGCGCTGACGGGCCGCGTGACGATCGTCAGCGG
CGGGCCGGGCACGGGCAAGACGACGACCGTCGTCGGCGTGCTGGCCTGTCTGCTCGACGCGCACCCGGGGCTGCGCATCG
CGCTGGCCGCACCGACCGGCAAGGCCGCGCAGCGGATGCAGGAGGCGCTGCACGCGCGCGCCGGCGATCTGCCGCCCGAG
CTCGCGGCGCGCCTGCCCGACACGTCGTACACGCTGCATCGGCTGCTGGGCGGCGGCGGGGCAGCCGGCTTTCGGCATCA
TCGCGACAATCCGTTGCCGTACGACCTGATCGTCGTCGACGAGGCGTCGATGATCGACGTCGCGCTCGCCGCGCATCTGC
TCGACGCGCTCGCGCCGGGCGCGCGGCTCGTGTTGCTGGGCGACAAGGACCAACTGGCGGCGGTCGAGGCCGGCGCCGTA
TTCGCGGAGCTGAGCGCGCGGCCGGCGTTCACCGCCGCGGCGCGCGCGCGCATCGCGCAGGCGCTGGGCATCGACGAGGC
GACGTTCGTCGCGGCGTTGCCGGCGCCGGACGAGGCGGCGCCGGTAGCGGTTCCGGCCGCGCAGCCGGTTTCCGCTTCCG
CACGGGCTCCGGCGTCGCCATCGGCATCCGCGCCTGTTTCGCGCAAATCGGCGCTTCGGTCGTCGAAAGTCGATGCGCGA
CAGGCGTCGCTGTTCGACGACGAACCGCAGGATGACGAAGTGTCGTCGACCGACATCGCGCCGCCCCCGCGCGCCGAGTC
GGCACTGACCGCCGATGCCGGCGCACCAGACGGCAAGGCACCGGCCTGGATCGAGGCCGACGAACTCGCGTGGCTCGACA
CCGTCGAGCTGCCGCCATTCGACGCAGGCGATGCGGCGCTTGCATCGATGACGGCGCCCGCATCGCCATTGGCCGGCGAA
GCGGCAGCCGCAGCCGCGTCCACCGGCACGCCCGCCGCGGCGCCGCTCGCGGACTGCGTCGTATGGCTCGAACGCAATTA
CCGCTTCGGTCTCGATTCGCCGATCGGGCGGCTGTCGCTCGCGATCCGCCGCGGCGACGTGCAGGCGGCGCTCGAAGCGC
TGCCCGCCGACGATTCGGCCGCCGCATCGTTTCACGACGATGCGGGCGACACGCTGGCGTCGTCGACGGTCGAGCGGCTC
GCCCGGCGTTTCGGCGTCTACCTTGACGCATTGCGCGATGCGCTGGCCGCGCCGGCGCCCGATCCGCTGCCGCTGTTCGA
CGCGCTCAACCGGTTCCGGATCCTGTGCGCGACCCGCAGCGGCTCGCGCGGCGCGGAACACGTCAATGCGCTGGTGGCCG
CGCACGTGCGGCATGCGGCGCGCGTGCCGCTCGCGGTCGGCGCGCACTGGTTCACCGGGCGGCCGATCATGATCACACGC
AACGACTACGCGCTGGGGCTGTTCAACGGTGATATCGGCATCGCGCTGCCAGACGCGCATGGCGTGCTACGCGTGTGGTT
CCGGCGCGCGGACGGCACCGCGCGCGCGGTGTCGCCGGCTGCGCTGCCGCCGCACGAAACGGCTTTCGCGCTGACGGTGC
ACAAGTCGCAGGGCTCGGAATTCGACGAGGCGGCGCTCGTGCTGCCCGCGTCGTTCGGCCGGGTGCTGACGCGCGAGCTG
GTCTATACGGCCGTCACGCGCGCCCGCACGCGCGTGCAGGTGATCGGGCCGCGGCGCGTGCTGGCGCAGGCGGTCGCGAC
ACGCACGCAGCGCGATTCGGGGCTCGCGGCCCGCGTCGACGAGGCGCTTGCCCGGCGCCGCACGGAGGTTTCGCGATGA

Upstream 100 bases:

>100_bases
CAGGTTGGCGCAGCGGCGGCGAGCCGGCCGGCGTGCATGCGCGGCGGCCCGCCCGCGCGCTCGTCGACGCACTCGACCGG
ATGATGGAAGGGGGCCGCGC

Downstream 100 bases:

>100_bases
TGATTCGCTACACGCTCGATCCGGCCGAGGTCGAATGGACGGCCGTGCGCGCGCAGGGCGCGGGCGGGCAGAACGTGAAC
AAGGTGTCGAGCGCGATTCA

Product: exodeoxyribonuclease V, alpha subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 772; Mature: 771

Protein sequence:

>772_residues
MTASDDMLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPSASARWAARAAFATSRATASGHVCVALGALAQRY
EAPLDEVRAALAASGVVAFGTLARGDERPLIVDRLDHLYLSRYFDYERRLADALVAQAGVAAPDEGLSPDRLRDSLARYF
GPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPE
LAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAV
FAELSARPAFTAAARARIAQALGIDEATFVAALPAPDEAAPVAVPAAQPVSASARAPASPSASAPVSRKSALRSSKVDAR
QASLFDDEPQDDEVSSTDIAPPPRAESALTADAGAPDGKAPAWIEADELAWLDTVELPPFDAGDAALASMTAPASPLAGE
AAAAAASTGTPAAAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALEALPADDSAAASFHDDAGDTLASSTVERL
ARRFGVYLDALRDALAAPAPDPLPLFDALNRFRILCATRSGSRGAEHVNALVAAHVRHAARVPLAVGAHWFTGRPIMITR
NDYALGLFNGDIGIALPDAHGVLRVWFRRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTREL
VYTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVDEALARRRTEVSR

Sequences:

>Translated_772_residues
MTASDDMLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPSASARWAARAAFATSRATASGHVCVALGALAQRY
EAPLDEVRAALAASGVVAFGTLARGDERPLIVDRLDHLYLSRYFDYERRLADALVAQAGVAAPDEGLSPDRLRDSLARYF
GPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPE
LAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAV
FAELSARPAFTAAARARIAQALGIDEATFVAALPAPDEAAPVAVPAAQPVSASARAPASPSASAPVSRKSALRSSKVDAR
QASLFDDEPQDDEVSSTDIAPPPRAESALTADAGAPDGKAPAWIEADELAWLDTVELPPFDAGDAALASMTAPASPLAGE
AAAAAASTGTPAAAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALEALPADDSAAASFHDDAGDTLASSTVERL
ARRFGVYLDALRDALAAPAPDPLPLFDALNRFRILCATRSGSRGAEHVNALVAAHVRHAARVPLAVGAHWFTGRPIMITR
NDYALGLFNGDIGIALPDAHGVLRVWFRRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTREL
VYTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVDEALARRRTEVSR
>Mature_771_residues
TASDDMLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPSASARWAARAAFATSRATASGHVCVALGALAQRYE
APLDEVRAALAASGVVAFGTLARGDERPLIVDRLDHLYLSRYFDYERRLADALVAQAGVAAPDEGLSPDRLRDSLARYFG
PATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPEL
AARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAVF
AELSARPAFTAAARARIAQALGIDEATFVAALPAPDEAAPVAVPAAQPVSASARAPASPSASAPVSRKSALRSSKVDARQ
ASLFDDEPQDDEVSSTDIAPPPRAESALTADAGAPDGKAPAWIEADELAWLDTVELPPFDAGDAALASMTAPASPLAGEA
AAAAASTGTPAAAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALEALPADDSAAASFHDDAGDTLASSTVERLA
RRFGVYLDALRDALAAPAPDPLPLFDALNRFRILCATRSGSRGAEHVNALVAAHVRHAARVPLAVGAHWFTGRPIMITRN
DYALGLFNGDIGIALPDAHGVLRVWFRRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTRELV
YTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVDEALARRRTEVSR

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=272, Percent_Identity=46.6911764705882, Blast_Score=221, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 80465; Mature: 80333

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASDDMLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPSASARWAARAAFAT
CCCCCCHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
SRATASGHVCVALGALAQRYEAPLDEVRAALAASGVVAFGTLARGDERPLIVDRLDHLYL
HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
SRYFDYERRLADALVAQAGVAAPDEGLSPDRLRDSLARYFGPATGEVDWQRVAAIVALTG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEC
RVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPE
EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCHH
LAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPG
HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC
ARLVLLGDKDQLAAVEAGAVFAELSARPAFTAAARARIAQALGIDEATFVAALPAPDEAA
CEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
PVAVPAAQPVSASARAPASPSASAPVSRKSALRSSKVDARQASLFDDEPQDDEVSSTDIA
CEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCC
PPPRAESALTADAGAPDGKAPAWIEADELAWLDTVELPPFDAGDAALASMTAPASPLAGE
CCCCCCCCEECCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCH
AAAAAASTGTPAAAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALEALPADDSA
HHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEECCHHHHHHHHCCCCCCC
AASFHDDAGDTLASSTVERLARRFGVYLDALRDALAAPAPDPLPLFDALNRFRILCATRS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEEEECC
GSRGAEHVNALVAAHVRHAARVPLAVGAHWFTGRPIMITRNDYALGLFNGDIGIALPDAH
CCCCHHHHHHHHHHHHHHHHCCCCEECCEEECCCEEEEECCCEEEEEEECCEEEEECCCC
GVLRVWFRRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTREL
HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHH
VYTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVDEALARRRTEVSR
HHHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TASDDMLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPSASARWAARAAFAT
CCCCCHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
SRATASGHVCVALGALAQRYEAPLDEVRAALAASGVVAFGTLARGDERPLIVDRLDHLYL
HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
SRYFDYERRLADALVAQAGVAAPDEGLSPDRLRDSLARYFGPATGEVDWQRVAAIVALTG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEC
RVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRIALAAPTGKAAQRMQEALHARAGDLPPE
EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCHH
LAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPG
HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC
ARLVLLGDKDQLAAVEAGAVFAELSARPAFTAAARARIAQALGIDEATFVAALPAPDEAA
CEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
PVAVPAAQPVSASARAPASPSASAPVSRKSALRSSKVDARQASLFDDEPQDDEVSSTDIA
CEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCC
PPPRAESALTADAGAPDGKAPAWIEADELAWLDTVELPPFDAGDAALASMTAPASPLAGE
CCCCCCCCEECCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCH
AAAAAASTGTPAAAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALEALPADDSA
HHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEECCHHHHHHHHCCCCCCC
AASFHDDAGDTLASSTVERLARRFGVYLDALRDALAAPAPDPLPLFDALNRFRILCATRS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEEEECC
GSRGAEHVNALVAAHVRHAARVPLAVGAHWFTGRPIMITRNDYALGLFNGDIGIALPDAH
CCCCHHHHHHHHHHHHHHHHCCCCEECCEEECCCEEEEECCCEEEEEEECCEEEEECCCC
GVLRVWFRRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTREL
HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHH
VYTAVTRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVDEALARRRTEVSR
HHHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]