| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689150
Identifier: 116689150
GI number: 116689150
Start: 1238143
End: 1238760
Strand: Direct
Name: 116689150
Synonym: Bcen2424_1128
Alternate gene names: NA
Gene position: 1238143-1238760 (Clockwise)
Preceding gene: 116689149
Following gene: 116689151
Centisome position: 35.54
GC content: 70.23
Gene sequence:
>618_bases ATGGGGTCGGTCAATACGCAATCGCAAGCGTGCTCGCGCGGCGAGCGCCTTTCCGCGCTGGTCGACGGCGAAATGTTCGA TGGCCCGGATCACGGGCAGTTTCTGGCTGAGCTCGACCGCGCGGATCGCGCCGTGTGGGCCCATTACCACCTGATCGGCG ATGCGCTGCGCTCGGACGAGCTCGCGCTGTCGCCCGCGCTGAGCGTCGCGTTCACCGCGCGCATGTCGGCGGCGCTCGAA AGCGAGCCGCACCTGTTGGCACCGGCGGCCGCGCCGGTCGCGCGCAAGCTGCTGTCGCTGCGCCGCCGTGTCGTGCCGGC ATTCGCGGTGGCCGCCGCGGCCGCCACGCTGACGTGGATCGTCGTCCCGCAGATGCAGACGGCCGGTGCGCCGGGCGCCG TCCAGGTCGCGTCGACAGGCGCGCCGCAGAACGGCAATCTGCAGCGCGTGACGGTTGCGCAGGCATCGGCCCAGCCGGGC CTGCAGGACGTCAACATCATTCGCGACGCCAGCCTCGACCAATACCTTGAAGCGCACCAGCAATTCGCCCAGCAGCCCGT CGTCACGGGTTCGATGCCGCTGATCCGCGCTGCCGTGACCACCACGCCAGGCCAATAA
Upstream 100 bases:
>100_bases GCAAGCGCTGGTAAGCGCGACGGGCGGAACGACGCGGGTCGGGGTCTAGTTACGGATAGAGTCGTGAAGTCACGACGGGG TGTGCAAGATGGGGAGCATC
Downstream 100 bases:
>100_bases ACCCGATGCGGACATTGCAGTTGAATCACGCCATCTCCGGATGGAAGCGGCTGCCGGCCCTCCTGCTTTGCGCAGCCGCC CTGTTGTCCGTTCAATCCCT
Product: anti sigma-E protein, RseA
Products: NA
Alternate protein names: Sigma Factor Negative Regulatory Protein RseA Family; Sigma Factor AlgU Regulatory Protein MucA; Anti Sigma-E Protein RseA Family Protein
Number of amino acids: Translated: 205; Mature: 204
Protein sequence:
>205_residues MGSVNTQSQACSRGERLSALVDGEMFDGPDHGQFLAELDRADRAVWAHYHLIGDALRSDELALSPALSVAFTARMSAALE SEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWIVVPQMQTAGAPGAVQVASTGAPQNGNLQRVTVAQASAQPG LQDVNIIRDASLDQYLEAHQQFAQQPVVTGSMPLIRAAVTTTPGQ
Sequences:
>Translated_205_residues MGSVNTQSQACSRGERLSALVDGEMFDGPDHGQFLAELDRADRAVWAHYHLIGDALRSDELALSPALSVAFTARMSAALE SEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWIVVPQMQTAGAPGAVQVASTGAPQNGNLQRVTVAQASAQPG LQDVNIIRDASLDQYLEAHQQFAQQPVVTGSMPLIRAAVTTTPGQ >Mature_204_residues GSVNTQSQACSRGERLSALVDGEMFDGPDHGQFLAELDRADRAVWAHYHLIGDALRSDELALSPALSVAFTARMSAALES EPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWIVVPQMQTAGAPGAVQVASTGAPQNGNLQRVTVAQASAQPGL QDVNIIRDASLDQYLEAHQQFAQQPVVTGSMPLIRAAVTTTPGQ
Specific function: Unknown
COG id: COG3073
COG function: function code T; Negative regulator of sigma E activity
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21509; Mature: 21377
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSVNTQSQACSRGERLSALVDGEMFDGPDHGQFLAELDRADRAVWAHYHLIGDALRSDE CCCCCCHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LALSPALSVAFTARMSAALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWI HHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE VVPQMQTAGAPGAVQVASTGAPQNGNLQRVTVAQASAQPGLQDVNIIRDASLDQYLEAHQ EEECHHCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHH QFAQQPVVTGSMPLIRAAVTTTPGQ HHHHCCCCCCCCHHHHHEEECCCCC >Mature Secondary Structure GSVNTQSQACSRGERLSALVDGEMFDGPDHGQFLAELDRADRAVWAHYHLIGDALRSDE CCCCCHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LALSPALSVAFTARMSAALESEPHLLAPAAAPVARKLLSLRRRVVPAFAVAAAAATLTWI HHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE VVPQMQTAGAPGAVQVASTGAPQNGNLQRVTVAQASAQPGLQDVNIIRDASLDQYLEAHQ EEECHHCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCCHHHHHHHHH QFAQQPVVTGSMPLIRAAVTTTPGQ HHHHCCCCCCCCHHHHHEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA