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The map label for this gene is orn

Identifier: 116689101

GI number: 116689101

Start: 1190523

End: 1191143

Strand: Direct

Name: orn

Synonym: Bcen2424_1078

Alternate gene names: 116689101

Gene position: 1190523-1191143 (Clockwise)

Preceding gene: 116689097

Following gene: 116689104

Centisome position: 34.17

GC content: 65.7

Gene sequence:

>621_bases
ATGACCGATACCGCCGCTTCCGCCAGCCAGCCCGCGCTCGTGCGCAACGAGTTGAACCTCGTCTGGCTCGACATGGAGAT
GACGGGCCTCGACCCGGATAACGACCGCATCATCGAGATCGCGGTCGTCGTGACCAATTCCACGCTCGACATCGCCGTCG
AGGGCCCGGTGTTCGCGATCCACCAGAGCGACGAGACGCTCGCGAAGATGGACGACTGGAACAAGTCGACGCACGGCCGC
TCGGGCCTGATCGACCGCGTGCGCGCATCGACCGTGACCGAGGCGGAAGCCGCCGCGCAGTTGCAGGCGTTCCTCGCGCA
GTACGTGTCGCCCGGCAAGTCGCCGATGTGCGGCAACTCGATTTGCCAGGACCGCCGCTTCATGGCGCGCTGGATGCCGG
AATTCGAGCGATTCTTCCACTACCGTAACCTCGACGTCAGCACGCTCAAGGAGCTGTGCCGCCGCTGGCAGCCGGCCATC
TACAAGGGTTTCCAGAAGCGGGCGATGCACACGGCGCTCGCGGACATCCACGAGTCGATCGACGAGCTGAAGTACTACCG
CGAGCATTTCCTGATTCCGGCCGCGTCGGTGTCGGCAGGCGAGTCCGCGCCGGCCGCCTGA

Upstream 100 bases:

>100_bases
GAATTATATGTTCTTGCGGACCGGCCCCGCTGATGCGATGCCGGCCGCCCGGGCGGCGCTGCATCGGCGAGGCCCGGTCC
GCCATTTGCCAGGATGAATC

Downstream 100 bases:

>100_bases
GCGGGCCGGCACGCGCGCCGCGCTCGGCCAACGCTCAGCGCCGCGCGCTTTTCGGCCGGAACGCCGCGACCACCGCGGCG
TCGGTCTCGATATACGGGCC

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGR
SGLIDRVRASTVTEAEAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYREHFLIPAASVSAGESAPAA

Sequences:

>Translated_206_residues
MTDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGR
SGLIDRVRASTVTEAEAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAI
YKGFQKRAMHTALADIHESIDELKYYREHFLIPAASVSAGESAPAA
>Mature_205_residues
TDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAIHQSDETLAKMDDWNKSTHGRS
GLIDRVRASTVTEAEAAAQLQAFLAQYVSPGKSPMCGNSICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAIY
KGFQKRAMHTALADIHESIDELKYYREHFLIPAASVSAGESAPAA

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=47.9768786127168, Blast_Score=179, Evalue=2e-45,
Organism=Escherichia coli, GI87082382, Length=176, Percent_Identity=61.9318181818182, Blast_Score=240, Evalue=6e-65,
Organism=Caenorhabditis elegans, GI17557752, Length=182, Percent_Identity=42.8571428571429, Blast_Score=160, Evalue=4e-40,
Organism=Saccharomyces cerevisiae, GI6323088, Length=198, Percent_Identity=38.8888888888889, Blast_Score=125, Evalue=7e-30,
Organism=Drosophila melanogaster, GI21355135, Length=174, Percent_Identity=41.3793103448276, Blast_Score=156, Evalue=8e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ORN_BURCA (Q1BXZ5)

Other databases:

- EMBL:   CP000378
- RefSeq:   YP_620483.1
- ProteinModelPortal:   Q1BXZ5
- SMR:   Q1BXZ5
- STRING:   Q1BXZ5
- GeneID:   4092723
- GenomeReviews:   CP000378_GR
- KEGG:   bcn:Bcen_0599
- eggNOG:   COG1949
- HOGENOM:   HBG448545
- OMA:   WNKGTHG
- ProtClustDB:   PRK05359
- BioCyc:   BCEN331271:BCEN_0599-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00045
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337
- SMART:   SM00479

Pfam domain/function: PF00929 Exonuc_X-T; SSF53098 RNaseH_fold

EC number: 3.1.-.- [C]

Molecular weight: Translated: 23106; Mature: 22975

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: ACT_SITE 141-141

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAI
CCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCEEEE
HQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAAQLQAFLAQYVSPGKSPMCGNS
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYREHFLIPAASVSAGESAPAA
HHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDTAASASQPALVRNELNLVWLDMEMTGLDPDNDRIIEIAVVVTNSTLDIAVEGPVFAI
CCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEECCEEEEEECCCEEEE
HQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAAQLQAFLAQYVSPGKSPMCGNS
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ICQDRRFMARWMPEFERFFHYRNLDVSTLKELCRRWQPAIYKGFQKRAMHTALADIHESI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
DELKYYREHFLIPAASVSAGESAPAA
HHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA