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The map label for this gene is rimM [H]

Identifier: 116689093

GI number: 116689093

Start: 1183911

End: 1184588

Strand: Direct

Name: rimM [H]

Synonym: Bcen2424_1070

Alternate gene names: 116689093

Gene position: 1183911-1184588 (Clockwise)

Preceding gene: 116689092

Following gene: 116689094

Centisome position: 33.98

GC content: 65.49

Gene sequence:

>678_bases
ATGGCGGGTCACGATTCCGGTAATGCAAGGCGCGGGCGTGCGTCATTCGGCGCATTCGTCCGCAAGCCGGTCGAGCGCGA
CTCGGTCGCGAACGCCGGTCAGGCTGCCGAACAAGGTAGTCCCGAAGCGACGCAGGCCTGGCCCGACGATGCCGTCGAGG
TCGGAGCGGTGGTCGACGCCTACGGCCTGAAGGGCTGGGTCAAGGTGGCGACGCATGCCGATGCCGGTCGCGGCGGCGAC
GCGCTGCTCAACGCGCGTCGCTGGTGGCTGGAGCGCGGTGCGGAGCGGCTTTCCGTCCGCATCATGCAGTCGAAGACGCA
CAGCGACACTGTCGTTGCGCAACCTGCGGGCGTCAGCGACCGCGATGCTGCGCTGTCCATGCGCGGTTTTCGCGTGTTCG
TGCGCCGGGAAGATTTCCCGGCACTCGCCGCGGACGAATTCTATTGGGTCGACCTGATCGGTCTCGAGGTCGTCAACGAG
CAATCGGTGGCGCTCGGGAAGGTGAGCGGGATGATCGACAACGGCGTGCATTCGATCATGCGTGTCGAGTATCCGGCAAC
CGGCAAAGACGGTCAGCCGACCACCGACGAGCGGTTGATTCCGTTCGTCGGTGTCTACGTCAAAACGGTGGATCAGGCGG
CGCGTCGCATCGTCGTCGACTGGGAAGCCGATTACTGA

Upstream 100 bases:

>100_bases
GTCGCCGACCGTCCAGCGTCTCGTGAAGGAAGCGCAAAAGGCGCAACCGGCTGCCTAACATGGCACGGTGTGCCGGTCGT
GCCGGCTGTGAGGTGCATTG

Downstream 100 bases:

>100_bases
AATGAACCAGGTTACCGAGAGCGCGGTGCAGTTCGACGTCGTCACGCTCTTTCCCGAGATGTTCCGTGCACTGACCGACT
GGGGAATCACCAGCCGGGCC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MAGHDSGNARRGRASFGAFVRKPVERDSVANAGQAAEQGSPEATQAWPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGD
ALLNARRWWLERGAERLSVRIMQSKTHSDTVVAQPAGVSDRDAALSMRGFRVFVRREDFPALAADEFYWVDLIGLEVVNE
QSVALGKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADY

Sequences:

>Translated_225_residues
MAGHDSGNARRGRASFGAFVRKPVERDSVANAGQAAEQGSPEATQAWPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGD
ALLNARRWWLERGAERLSVRIMQSKTHSDTVVAQPAGVSDRDAALSMRGFRVFVRREDFPALAADEFYWVDLIGLEVVNE
QSVALGKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADY
>Mature_224_residues
AGHDSGNARRGRASFGAFVRKPVERDSVANAGQAAEQGSPEATQAWPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDA
LLNARRWWLERGAERLSVRIMQSKTHSDTVVAQPAGVSDRDAALSMRGFRVFVRREDFPALAADEFYWVDLIGLEVVNEQ
SVALGKVSGMIDNGVHSIMRVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=187, Percent_Identity=28.8770053475936, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 24457; Mature: 24325

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHDSGNARRGRASFGAFVRKPVERDSVANAGQAAEQGSPEATQAWPDDAVEVGAVVDA
CCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
YGLKGWVKVATHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTHSDTVVAQPAGVSD
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHEEEEECCCCCCCEEEECCCCCCC
RDAALSMRGFRVFVRREDFPALAADEFYWVDLIGLEVVNEQSVALGKVSGMIDNGVHSIM
CHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHE
RVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADY
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCC
>Mature Secondary Structure 
AGHDSGNARRGRASFGAFVRKPVERDSVANAGQAAEQGSPEATQAWPDDAVEVGAVVDA
CCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
YGLKGWVKVATHADAGRGGDALLNARRWWLERGAERLSVRIMQSKTHSDTVVAQPAGVSD
CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHEEEEECCCCCCCEEEECCCCCCC
RDAALSMRGFRVFVRREDFPALAADEFYWVDLIGLEVVNEQSVALGKVSGMIDNGVHSIM
CHHHHHHCCEEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHE
RVEYPATGKDGQPTTDERLIPFVGVYVKTVDQAARRIVVDWEADY
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA