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The map label for this gene is ydhC [H]

Identifier: 116689046

GI number: 116689046

Start: 1132009

End: 1132689

Strand: Reverse

Name: ydhC [H]

Synonym: Bcen2424_1023

Alternate gene names: 116689046

Gene position: 1132689-1132009 (Counterclockwise)

Preceding gene: 116689049

Following gene: 116689045

Centisome position: 32.51

GC content: 69.6

Gene sequence:

>681_bases
ATGAGCACCCTGACCGACGTCACCCGCGACCGCCCCGCCGCGTCGTCAGCCAGCCTCGCCGACCGCGCGTACGCGCTGAT
CCAGCGGGACATCATCACGATGCGCCTGAAGCCGGGCGCCGCGCTCAACGAAGCCGACCTCGTTGCACGCACCGGAATCG
GCCGCACGCCGGTGCACCAGGCCGTGCATCGGCTCGTGCTCGAAGGGCTGCTGTCCGTGATACCGCGCAAGGGCTTGATG
GTGCAGCCGCTCTCGCTCGACGACATCGTCGCGGTGATCGACGTGCGGCGCATCAACGAAGCGCACTGCGCCGAACTCGC
CGCGCGTCATGCGACGCCCGACGATCTCGCGCGCCTGGCCGCGCTGCTCGACGATGGGCAGGCCTGCGTCGACACGCACG
ACGTCGAGGGCATGATGGAGCTCGACCGCGCGTTTCATCAGACGATCGCCGCGGCCGCGCGCAATGCGGTGCTCGCCGAC
ATCCTGCGCGCGCTGCACGAGCGCTCGCTGCGCTTCTGGTTCGTCACGCTGTCCGAACCGCACCATCTCGCCGACGTCCA
GCACGAGCATCGCGCGCTGTTCGACCGGCTGTCCGCACGCGACGCCGCCGGCGCGCGCGCGGCCGTCGTAGGCCATATCG
ATTCGTTCCGCTCCACGCTTCTTCAACATCTTCGCCCCTGA

Upstream 100 bases:

>100_bases
ACACCAGTGATATATCACAATAATATCCAGGGATCGCCCTACGCTTCCCGGGCATCCGCGCCATGATCGCGCCTGTTCCG
ACCCCGATCCCGCAATCGCC

Downstream 100 bases:

>100_bases
GCCGCCATGACCACTTTCACGCCGTTCCCCCCGCTCGCCCAGCTCGCCGCCGACCTCGCCGCCGGCCGGACCACGAGCCG
CGCGCTCGTCGACACCGCGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSTLTDVTRDRPAASSASLADRAYALIQRDIITMRLKPGAALNEADLVARTGIGRTPVHQAVHRLVLEGLLSVIPRKGLM
VQPLSLDDIVAVIDVRRINEAHCAELAARHATPDDLARLAALLDDGQACVDTHDVEGMMELDRAFHQTIAAAARNAVLAD
ILRALHERSLRFWFVTLSEPHHLADVQHEHRALFDRLSARDAAGARAAVVGHIDSFRSTLLQHLRP

Sequences:

>Translated_226_residues
MSTLTDVTRDRPAASSASLADRAYALIQRDIITMRLKPGAALNEADLVARTGIGRTPVHQAVHRLVLEGLLSVIPRKGLM
VQPLSLDDIVAVIDVRRINEAHCAELAARHATPDDLARLAALLDDGQACVDTHDVEGMMELDRAFHQTIAAAARNAVLAD
ILRALHERSLRFWFVTLSEPHHLADVQHEHRALFDRLSARDAAGARAAVVGHIDSFRSTLLQHLRP
>Mature_225_residues
STLTDVTRDRPAASSASLADRAYALIQRDIITMRLKPGAALNEADLVARTGIGRTPVHQAVHRLVLEGLLSVIPRKGLMV
QPLSLDDIVAVIDVRRINEAHCAELAARHATPDDLARLAALLDDGQACVDTHDVEGMMELDRAFHQTIAAAARNAVLADI
LRALHERSLRFWFVTLSEPHHLADVQHEHRALFDRLSARDAAGARAAVVGHIDSFRSTLLQHLRP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=202, Percent_Identity=25.2475247524752, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI87081914, Length=174, Percent_Identity=28.735632183908, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24772; Mature: 24640

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLTDVTRDRPAASSASLADRAYALIQRDIITMRLKPGAALNEADLVARTGIGRTPVHQ
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHCCCCCCHHHH
AVHRLVLEGLLSVIPRKGLMVQPLSLDDIVAVIDVRRINEAHCAELAARHATPDDLARLA
HHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
ALLDDGQACVDTHDVEGMMELDRAFHQTIAAAARNAVLADILRALHERSLRFWFVTLSEP
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
HHLADVQHEHRALFDRLSARDAAGARAAVVGHIDSFRSTLLQHLRP
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STLTDVTRDRPAASSASLADRAYALIQRDIITMRLKPGAALNEADLVARTGIGRTPVHQ
CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHCCCCCCHHHH
AVHRLVLEGLLSVIPRKGLMVQPLSLDDIVAVIDVRRINEAHCAELAARHATPDDLARLA
HHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
ALLDDGQACVDTHDVEGMMELDRAFHQTIAAAARNAVLADILRALHERSLRFWFVTLSEP
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
HHLADVQHEHRALFDRLSARDAAGARAAVVGHIDSFRSTLLQHLRP
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]