Click here to switch to the map view.

The map label for this gene is greB [H]

Identifier: 116689025

GI number: 116689025

Start: 1109795

End: 1110358

Strand: Direct

Name: greB [H]

Synonym: Bcen2424_1002

Alternate gene names: 116689025

Gene position: 1109795-1110358 (Clockwise)

Preceding gene: 116689024

Following gene: 116689028

Centisome position: 31.85

GC content: 65.25

Gene sequence:

>564_bases
ATGAACAAGGCGTTTGTCAAAGAGTCGGACGGTGACGACGACGATCTCGACCAGGCTCAACCCGCGATTCCGGCGGGTGC
GAAAAACTACATCACGCCGGCCGGCCACAAGCGGCTGCGGGACGAGCTGCTGAACCTGATCGACGTCGAGCGCCCCGAGG
TCGTGCGGCTCGTGTCGTGGGCCGCATCGAATGGCGATCGGTCGGAGAACGGCGACTACATCTACGGCAAGCGGCGGCTT
CGGGAGATCGATCGCCGCATCCGCTTCCTGACGAAGCGACTCGACCTCGCCGAAGTCGTCGACGCGAGCCGGCAGGAGAA
TGTCGACCAGGTGTTCTTCGGCGCGACGGTCGATTACGAGACGCCAGACGGCGAGGATCACACGGTGACGATCGTCGGGA
TCGACGAGGTCGACCTCGATCGCGGCTGCGTCAGCTGGATTTCGCCCGTCGCGCGTGCGCTGATCAAGGCGAAGATCGGC
GATACCGTCACGCTGATGACGCCGGCCGGCCCGCAGCCGATCGACATACTCGACGTCCGGTATCCGGCGCGGGGCGACGC
CTGA

Upstream 100 bases:

>100_bases
ATAAAAAGGGAAGCCTTATTCGCGAATTTGGTGCCATGGCCTTGGCCGGCCGCCCTTCGTGTACCCTTGGGGGATCAGTC
ATCCACGTTGAATCTGCATC

Downstream 100 bases:

>100_bases
GCATATCGGTCCGACGCAGCCAAGAAAAAGCGCCCCGATGGGGCGCTTTTTTATTCGCGTGTACGTTGCGTTGGCGTTGG
CGTTGCCGGTTGCTCAGAAG

Product: transcription elongation factor GreB

Products: NA

Alternate protein names: Transcript cleavage factor greB [H]

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNKAFVKESDGDDDDLDQAQPAIPAGAKNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRL
REIDRRIRFLTKRLDLAEVVDASRQENVDQVFFGATVDYETPDGEDHTVTIVGIDEVDLDRGCVSWISPVARALIKAKIG
DTVTLMTPAGPQPIDILDVRYPARGDA

Sequences:

>Translated_187_residues
MNKAFVKESDGDDDDLDQAQPAIPAGAKNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRL
REIDRRIRFLTKRLDLAEVVDASRQENVDQVFFGATVDYETPDGEDHTVTIVGIDEVDLDRGCVSWISPVARALIKAKIG
DTVTLMTPAGPQPIDILDVRYPARGDA
>Mature_187_residues
MNKAFVKESDGDDDDLDQAQPAIPAGAKNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRL
REIDRRIRFLTKRLDLAEVVDASRQENVDQVFFGATVDYETPDGEDHTVTIVGIDEVDLDRGCVSWISPVARALIKAKIG
DTVTLMTPAGPQPIDILDVRYPARGDA

Specific function: Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the greA/greB family [H]

Homologues:

Organism=Escherichia coli, GI87082261, Length=151, Percent_Identity=48.3443708609272, Blast_Score=134, Evalue=3e-33,
Organism=Escherichia coli, GI87082225, Length=152, Percent_Identity=34.8684210526316, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018151
- InterPro:   IPR001437
- InterPro:   IPR022691
- InterPro:   IPR006358 [H]

Pfam domain/function: PF01272 GreA_GreB; PF03449 GreA_GreB_N [H]

EC number: NA

Molecular weight: Translated: 20805; Mature: 20805

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00829 GREAB_1 ; PS00830 GREAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAFVKESDGDDDDLDQAQPAIPAGAKNYITPAGHKRLRDELLNLIDVERPEVVRLVSW
CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
AASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDLAEVVDASRQENVDQVFFGATVDYE
HHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCEECCC
TPDGEDHTVTIVGIDEVDLDRGCVSWISPVARALIKAKIGDTVTLMTPAGPQPIDILDVR
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEC
YPARGDA
CCCCCCC
>Mature Secondary Structure
MNKAFVKESDGDDDDLDQAQPAIPAGAKNYITPAGHKRLRDELLNLIDVERPEVVRLVSW
CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
AASNGDRSENGDYIYGKRRLREIDRRIRFLTKRLDLAEVVDASRQENVDQVFFGATVDYE
HHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEECCEECCC
TPDGEDHTVTIVGIDEVDLDRGCVSWISPVARALIKAKIGDTVTLMTPAGPQPIDILDVR
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEC
YPARGDA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]