| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is hcrC [H]
Identifier: 116688855
GI number: 116688855
Start: 933608
End: 935194
Strand: Direct
Name: hcrC [H]
Synonym: Bcen2424_0832
Alternate gene names: 116688855
Gene position: 933608-935194 (Clockwise)
Preceding gene: 116688853
Following gene: 116688856
Centisome position: 26.8
GC content: 69.25
Gene sequence:
>1587_bases ATGAGTGAGCCGATCCGCTTCTACCATCGTCACGCGATCCGCGAAGTCAGCGGCGCGGACGTGACCCGCACCGTGCTGCA ATACCTGCGCGAGGACGCGCATTGCACCGGCACCAAGGAAGGCTGCGCGGAAGGCGACTGCGGCGCGTGCACGGTCGTCG TCGGCGAGCTGACCGATGCCGGCGCGGTCGAGTTCAAGGCCGTCAACGCATGCATCCAGTTCCTGCCGACGCTCGACGGC AAGGCGCTCCTGACGGTCGAGGACCTGCGCCAGCCGGACGGCACGCTGCATCCGGTGCAGCAGGCGATGGTCGATTGCCA CGGTTCGCAATGCGGGTTCTGCACGCCCGGCTTCGTGATGTCGATGTGGGCGCTGTACGAGAAGCACGGCCACGAAGGCT GCGGCAGTGCGTGCGCGAAGGCGAAGGACGTGCCGACGCGCACCGAGATTGCCGATGCGCTGACCGGCAACCTGTGTCGC TGCACCGGCTATCGCCCGATCGTCGATGCGGCGGTGCGGATGTTCGATGCGACCGGCGAAGGCGCGACCGGCGAAGGTGC TCAGGCACCGTCGGCGCCGGTCGACACGGCCGCGCTCGCCCGCACGCTTGCATCGCTCAAGCGCGACGACACGTTCGACT ACACGACGATCGACGGCGCGCGCTTCGCGGCGCCGCGCACGCTCGACGCGCTGGCCGCGCTGAAGGCGGAGCGCCCCGAC GCGCGCATCCTCGCCGGCAGCACCGACATCGGCCTGTGGGTCACCAAGCAGATGCGCCGCCTCGACGACCTGATCTACGT CGGCCAGATCGCCGAACTGCAGCAGGTCGTGCACGGCGACGACTGGATCGAGATCGGCGCGGGCGTGACGGTCGAGAAGG CCTATGCGGCGCTGGCCGGCACGTATCCGGAGCTGACCGAGATGTGGAAGCGCTTCGCGTCGCTGCCGATCCGCAATGCG GGCACGCTCGGCGGCAACGTCGCGAACGGCTCGCCGATCGGCGATTCGATGCCGGGCCTGATCGCGCTCGGCGCGCGCGT CGTGCTGCGCGGCGGCGACACGGTGCGCGAGCTGCCGCTCGAGGCGCTCTATACGGGCTACCAGCAGAAGGACATGGCGC CGCACGAATTCGTCGTCGGCCTGAAGGTGCCGACCCGCACCGGCGCGCGCGACAAGCTGCAGTTCCGCACGTACAAGCTG TCGAAGCGCTTCGACTCGGACATCTCGGCCGTGTGTGCGGCGTTCGCGTTCATCGCGGACGGCGACACGATCCGCGAGCC GCGCATCGCGTTCGGCGGAATGGCCGCGACGCCGAAGCGCGCGGCCAATACGGAAGCCGTGCTCGACGGCGCGCAGTGGC ACGAAGCCACCGCGCAGGCCGCGATGCAGGCGCTCGAGCGCGACTACCAGCCGTTGTCCGACATGCGCGCGACGAGCACG TATCGGCTCGATACCGCGAAGAACCTGATGTATCGATTCTGGCTGGAGACGCGTCCGCACGACCCGTTGCCGCCGCAAGC CTTGAATGTGCGCGAAGTGGCCGCCGAAGTCGCCGCTGAAGCGGCCAACGACGCGGCGCGCGTCTGA
Upstream 100 bases:
>100_bases TTGCGGAATTTGACGGTGATAGCGTGCAAACTGTCAGAAAAACGTCGGTCGAGCGCTCCGCGCAGGCCGCCTTGCCCCCC ATTTGAAGAAACGCCGAGAC
Downstream 100 bases:
>100_bases CGAGGGAGAACACCGAACATGAACCAGCAAGCAGAACCGTTCCTGAGCACCCTCGATCCGCAGGCCGACGCCGCGCAGGT GCACGTGTCGCGCGCCCACG
Product: 2Fe-2S ferredoxin, iron-sulfur binding site
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 528; Mature: 527
Protein sequence:
>528_residues MSEPIRFYHRHAIREVSGADVTRTVLQYLREDAHCTGTKEGCAEGDCGACTVVVGELTDAGAVEFKAVNACIQFLPTLDG KALLTVEDLRQPDGTLHPVQQAMVDCHGSQCGFCTPGFVMSMWALYEKHGHEGCGSACAKAKDVPTRTEIADALTGNLCR CTGYRPIVDAAVRMFDATGEGATGEGAQAPSAPVDTAALARTLASLKRDDTFDYTTIDGARFAAPRTLDALAALKAERPD ARILAGSTDIGLWVTKQMRRLDDLIYVGQIAELQQVVHGDDWIEIGAGVTVEKAYAALAGTYPELTEMWKRFASLPIRNA GTLGGNVANGSPIGDSMPGLIALGARVVLRGGDTVRELPLEALYTGYQQKDMAPHEFVVGLKVPTRTGARDKLQFRTYKL SKRFDSDISAVCAAFAFIADGDTIREPRIAFGGMAATPKRAANTEAVLDGAQWHEATAQAAMQALERDYQPLSDMRATST YRLDTAKNLMYRFWLETRPHDPLPPQALNVREVAAEVAAEAANDAARV
Sequences:
>Translated_528_residues MSEPIRFYHRHAIREVSGADVTRTVLQYLREDAHCTGTKEGCAEGDCGACTVVVGELTDAGAVEFKAVNACIQFLPTLDG KALLTVEDLRQPDGTLHPVQQAMVDCHGSQCGFCTPGFVMSMWALYEKHGHEGCGSACAKAKDVPTRTEIADALTGNLCR CTGYRPIVDAAVRMFDATGEGATGEGAQAPSAPVDTAALARTLASLKRDDTFDYTTIDGARFAAPRTLDALAALKAERPD ARILAGSTDIGLWVTKQMRRLDDLIYVGQIAELQQVVHGDDWIEIGAGVTVEKAYAALAGTYPELTEMWKRFASLPIRNA GTLGGNVANGSPIGDSMPGLIALGARVVLRGGDTVRELPLEALYTGYQQKDMAPHEFVVGLKVPTRTGARDKLQFRTYKL SKRFDSDISAVCAAFAFIADGDTIREPRIAFGGMAATPKRAANTEAVLDGAQWHEATAQAAMQALERDYQPLSDMRATST YRLDTAKNLMYRFWLETRPHDPLPPQALNVREVAAEVAAEAANDAARV >Mature_527_residues SEPIRFYHRHAIREVSGADVTRTVLQYLREDAHCTGTKEGCAEGDCGACTVVVGELTDAGAVEFKAVNACIQFLPTLDGK ALLTVEDLRQPDGTLHPVQQAMVDCHGSQCGFCTPGFVMSMWALYEKHGHEGCGSACAKAKDVPTRTEIADALTGNLCRC TGYRPIVDAAVRMFDATGEGATGEGAQAPSAPVDTAALARTLASLKRDDTFDYTTIDGARFAAPRTLDALAALKAERPDA RILAGSTDIGLWVTKQMRRLDDLIYVGQIAELQQVVHGDDWIEIGAGVTVEKAYAALAGTYPELTEMWKRFASLPIRNAG TLGGNVANGSPIGDSMPGLIALGARVVLRGGDTVRELPLEALYTGYQQKDMAPHEFVVGLKVPTRTGARDKLQFRTYKLS KRFDSDISAVCAAFAFIADGDTIREPRIAFGGMAATPKRAANTEAVLDGAQWHEATAQAAMQALERDYQPLSDMRATSTY RLDTAKNLMYRFWLETRPHDPLPPQALNVREVAAEVAAEAANDAARV
Specific function: Catalyzes reductive dehydroxylation of 4-hydroxybenzoyl- CoA. Reaction is not reversible [H]
COG id: COG4630
COG function: function code F; Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]
Homologues:
Organism=Homo sapiens, GI91823271, Length=522, Percent_Identity=29.5019157088123, Blast_Score=173, Evalue=3e-43, Organism=Homo sapiens, GI71773480, Length=476, Percent_Identity=26.6806722689076, Blast_Score=158, Evalue=1e-38, Organism=Escherichia coli, GI1786480, Length=164, Percent_Identity=37.8048780487805, Blast_Score=92, Evalue=9e-20, Organism=Escherichia coli, GI1789231, Length=284, Percent_Identity=26.056338028169, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1789232, Length=147, Percent_Identity=37.4149659863946, Blast_Score=84, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17540638, Length=551, Percent_Identity=29.038112522686, Blast_Score=204, Evalue=1e-52, Organism=Caenorhabditis elegans, GI32566215, Length=479, Percent_Identity=26.3048016701461, Blast_Score=129, Evalue=3e-30, Organism=Caenorhabditis elegans, GI17539860, Length=480, Percent_Identity=26.875, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI17737937, Length=504, Percent_Identity=32.5396825396825, Blast_Score=222, Evalue=5e-58, Organism=Drosophila melanogaster, GI24647201, Length=501, Percent_Identity=27.5449101796407, Blast_Score=165, Evalue=9e-41, Organism=Drosophila melanogaster, GI24647197, Length=530, Percent_Identity=27.7358490566038, Blast_Score=164, Evalue=1e-40, Organism=Drosophila melanogaster, GI24647199, Length=499, Percent_Identity=28.8577154308617, Blast_Score=163, Evalue=2e-40, Organism=Drosophila melanogaster, GI24647193, Length=507, Percent_Identity=28.5996055226824, Blast_Score=152, Evalue=6e-37, Organism=Drosophila melanogaster, GI24647195, Length=346, Percent_Identity=30.635838150289, Blast_Score=145, Evalue=9e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002888 - InterPro: IPR006058 - InterPro: IPR017606 - InterPro: IPR012675 - InterPro: IPR001041 [H]
Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]
EC number: =1.3.99.20 [H]
Molecular weight: Translated: 56872; Mature: 56741
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS00059 ADH_ZINC ; PS00197 2FE2S_FER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPIRFYHRHAIREVSGADVTRTVLQYLREDAHCTGTKEGCAEGDCGACTVVVGELTDA CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCC GAVEFKAVNACIQFLPTLDGKALLTVEDLRQPDGTLHPVQQAMVDCHGSQCGFCTPGFVM CCHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH SMWALYEKHGHEGCGSACAKAKDVPTRTEIADALTGNLCRCTGYRPIVDAAVRMFDATGE HHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCC GATGEGAQAPSAPVDTAALARTLASLKRDDTFDYTTIDGARFAAPRTLDALAALKAERPD CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHCCCHHHHHHHHHHCCCCC ARILAGSTDIGLWVTKQMRRLDDLIYVGQIAELQQVVHGDDWIEIGAGVTVEKAYAALAG CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC TYPELTEMWKRFASLPIRNAGTLGGNVANGSPIGDSMPGLIALGARVVLRGGDTVRELPL CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEECCCHHHHCCH EALYTGYQQKDMAPHEFVVGLKVPTRTGARDKLQFRTYKLSKRFDSDISAVCAAFAFIAD HHHHCCCHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC GDTIREPRIAFGGMAATPKRAANTEAVLDGAQWHEATAQAAMQALERDYQPLSDMRATST CCCCCCCCHHCCCCCCCCCHHCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCE YRLDTAKNLMYRFWLETRPHDPLPPQALNVREVAAEVAAEAANDAARV EECHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SEPIRFYHRHAIREVSGADVTRTVLQYLREDAHCTGTKEGCAEGDCGACTVVVGELTDA CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCC GAVEFKAVNACIQFLPTLDGKALLTVEDLRQPDGTLHPVQQAMVDCHGSQCGFCTPGFVM CCHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH SMWALYEKHGHEGCGSACAKAKDVPTRTEIADALTGNLCRCTGYRPIVDAAVRMFDATGE HHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCC GATGEGAQAPSAPVDTAALARTLASLKRDDTFDYTTIDGARFAAPRTLDALAALKAERPD CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHCCCHHHHHHHHHHCCCCC ARILAGSTDIGLWVTKQMRRLDDLIYVGQIAELQQVVHGDDWIEIGAGVTVEKAYAALAG CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC TYPELTEMWKRFASLPIRNAGTLGGNVANGSPIGDSMPGLIALGARVVLRGGDTVRELPL CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEECCCHHHHCCH EALYTGYQQKDMAPHEFVVGLKVPTRTGARDKLQFRTYKLSKRFDSDISAVCAAFAFIAD HHHHCCCHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCC GDTIREPRIAFGGMAATPKRAANTEAVLDGAQWHEATAQAAMQALERDYQPLSDMRATST CCCCCCCCHHCCCCCCCCCHHCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCE YRLDTAKNLMYRFWLETRPHDPLPPQALNVREVAAEVAAEAANDAARV EECHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9490068 [H]