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The map label for this gene is ybbO [C]

Identifier: 116688803

GI number: 116688803

Start: 878900

End: 879655

Strand: Direct

Name: ybbO [C]

Synonym: Bcen2424_0780

Alternate gene names: 116688803

Gene position: 878900-879655 (Clockwise)

Preceding gene: 116688802

Following gene: 116688804

Centisome position: 25.23

GC content: 58.07

Gene sequence:

>756_bases
GTGACGGGCGCGAGTTCTGGAATCGGACTTGCGTTGGCACTCGAGTATGCCGCTCCGGGGGTTGTCCTTGGGTTGGTTGC
GCGGGACGAGGCGAGACTGAATGCATGCGAAGCGGCTTGTCGTGAGCGCGGGGCAACGGTTGTCGCCGGTCGCATTGATG
TCCGGAATGCATTGCAACTAGAGGCGTGGCTTCATCGATTCGACGACGTGTACCCGATTGACCTGTTGATCGCCAATGCA
GGGGCGGCAAGCACGCTCGCATCCAGTTCTGATTGGGAGGCCCTCGATCGAACGGTGATAGTCAACGATACGAATTTCTA
TGGCACCCTACATGCAGTCTTGCCGGTGGTTGAGCGGATGCGTGTGCGCGGGTACGGGCAGATCGCAATGGTCAGTTCGA
TTGCGGCACTGCGTGGTATGGCCATTTCGCCGGCCTATTGTGCCAGTAAGGCAGCAATCAAGGCATATGGCGACTCGGTT
CGTCCACTTCTTGCGCGCGAGGGGATTGTGTTGTCTGTTGTCCTGCCTGGATTCGTAAAAACATCGATGAGCGATGTGTT
TCCCGGTGACAAACCATTCATATGGTCGGCCGACAAGGCTGCCCGCCGCATACGTGCTGGACTTGCGGCCAAACGCGCCG
AAATCGCGTTTCCGGCGATGCTTGCGGTGGGCATGCGACTACTTAACGTTTTACCGGTGCGGATCGCAGACGCCATCCTG
TCACGCTTGTCCTACATTCCACGAGAGGGGCAATAG

Upstream 100 bases:

>100_bases
GGCGACTTTTACACCCGTACCGGAATTGAGATGGCGGTTGAGCGCACGGTCATGCGGCTGGAGGCAACGCGTGTCTAGGG
GGAGCGTACGTCACGTAATC

Downstream 100 bases:

>100_bases
CTTGAGTGGGGAACTTGCGACGCATGGTTTCGCAATTGCAGCGGCGCTGGTGTTGTCCTTTGTCGCGGATTTGGTGGCCC
GCCCGCGAGGCGCGTGGCGT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTGASSGIGLALALEYAAPGVVLGLVARDEARLNACEAACRERGATVVAGRIDVRNALQLEAWLHRFDDVYPIDLLIANA
GAASTLASSSDWEALDRTVIVNDTNFYGTLHAVLPVVERMRVRGYGQIAMVSSIAALRGMAISPAYCASKAAIKAYGDSV
RPLLAREGIVLSVVLPGFVKTSMSDVFPGDKPFIWSADKAARRIRAGLAAKRAEIAFPAMLAVGMRLLNVLPVRIADAIL
SRLSYIPREGQ

Sequences:

>Translated_251_residues
MTGASSGIGLALALEYAAPGVVLGLVARDEARLNACEAACRERGATVVAGRIDVRNALQLEAWLHRFDDVYPIDLLIANA
GAASTLASSSDWEALDRTVIVNDTNFYGTLHAVLPVVERMRVRGYGQIAMVSSIAALRGMAISPAYCASKAAIKAYGDSV
RPLLAREGIVLSVVLPGFVKTSMSDVFPGDKPFIWSADKAARRIRAGLAAKRAEIAFPAMLAVGMRLLNVLPVRIADAIL
SRLSYIPREGQ
>Mature_250_residues
TGASSGIGLALALEYAAPGVVLGLVARDEARLNACEAACRERGATVVAGRIDVRNALQLEAWLHRFDDVYPIDLLIANAG
AASTLASSSDWEALDRTVIVNDTNFYGTLHAVLPVVERMRVRGYGQIAMVSSIAALRGMAISPAYCASKAAIKAYGDSVR
PLLAREGIVLSVVLPGFVKTSMSDVFPGDKPFIWSADKAARRIRAGLAAKRAEIAFPAMLAVGMRLLNVLPVRIADAILS
RLSYIPREGQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI210032110, Length=256, Percent_Identity=28.125, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI7657478, Length=206, Percent_Identity=32.5242718446602, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=30.5263157894737, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1786701, Length=268, Percent_Identity=26.865671641791, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=216, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=194, Percent_Identity=28.8659793814433, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=197, Percent_Identity=28.4263959390863, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=30.6122448979592, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24649181, Length=259, Percent_Identity=25.8687258687259, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358495, Length=189, Percent_Identity=29.1005291005291, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580925, Length=207, Percent_Identity=32.8502415458937, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI23397609, Length=190, Percent_Identity=32.1052631578947, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26708; Mature: 26577

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGASSGIGLALALEYAAPGVVLGLVARDEARLNACEAACRERGATVVAGRIDVRNALQL
CCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH
EAWLHRFDDVYPIDLLIANAGAASTLASSSDWEALDRTVIVNDTNFYGTLHAVLPVVERM
HHHHHHHCCCCEEEEEEECCCCHHHHCCCCCHHHHCCEEEEECCCHHHHHHHHHHHHHHH
RVRGYGQIAMVSSIAALRGMAISPAYCASKAAIKAYGDSVRPLLAREGIVLSVVLPGFVK
HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEHHHHHH
TSMSDVFPGDKPFIWSADKAARRIRAGLAAKRAEIAFPAMLAVGMRLLNVLPVRIADAIL
HHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRLSYIPREGQ
HHHHCCCCCCC
>Mature Secondary Structure 
TGASSGIGLALALEYAAPGVVLGLVARDEARLNACEAACRERGATVVAGRIDVRNALQL
CCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH
EAWLHRFDDVYPIDLLIANAGAASTLASSSDWEALDRTVIVNDTNFYGTLHAVLPVVERM
HHHHHHHCCCCEEEEEEECCCCHHHHCCCCCHHHHCCEEEEECCCHHHHHHHHHHHHHHH
RVRGYGQIAMVSSIAALRGMAISPAYCASKAAIKAYGDSVRPLLAREGIVLSVVLPGFVK
HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCEEEEEEHHHHHH
TSMSDVFPGDKPFIWSADKAARRIRAGLAAKRAEIAFPAMLAVGMRLLNVLPVRIADAIL
HHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRLSYIPREGQ
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]