| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is dtd [H]
Identifier: 116688707
GI number: 116688707
Start: 763503
End: 763961
Strand: Direct
Name: dtd [H]
Synonym: Bcen2424_0684
Alternate gene names: 116688707
Gene position: 763503-763961 (Clockwise)
Preceding gene: 116688706
Following gene: 116688708
Centisome position: 21.92
GC content: 71.9
Gene sequence:
>459_bases ATGATCGCGCTGATCCAGCGCGTGACGCGTGCCGACGTGCGCGTCGGCGGCCGCACGACGGGCGAGATCGGCGCGGGCCT GCTCGCGCTGGTCTGCGCGGAGCGCGGCGATACCGAGGCCGCGGCCGACAAGCTGCTCGCGAAGCTGCTCGGCTACCGCG TGTTCAGCGACGCAGCCGGCAAGATGAACCTGCCGGTGTCGAACATCGACGGCGAAGGCCGCGCGGGCGGCCTGCTGCTC GTGTCGCAGTTCACGCTGGCGGCCGATACCAACAGCGGGCTGCGTCCGAGCTTCACGCCGGCCGCACCGCCCGACGAGGG CGCGCGGTTGTTCGACTATTTCGTCGCGGCCGCGCGGGCGCGGCACCCGATCGTCGAGACGGGCGAGTTCGGCGCCGACA TGCAGGTGTCGCTCGTCAACGACGGCCCCGTGACGTTCTGGCTGCAAGTGCGGCCCTGA
Upstream 100 bases:
>100_bases TCGACGGCGCGACCGTGTCGGACAAGGGCCTGAAGGTCGAGGCCGGCGAGTTCGTGGTGCAGGTCGGCAAGCGCCGCTTC GCGCGCGTCACGCTGACCGC
Downstream 100 bases:
>100_bases TTCTTTCCCGGAGGCGCGCCGCGATGGCCACCACGCAGATTCTTTTCATCCGCCATGGCGAGACGGCCTGGAACCGCATC AAGCGCATCCAGGGGCATAT
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 152; Mature: 152
Protein sequence:
>152_residues MIALIQRVTRADVRVGGRTTGEIGAGLLALVCAERGDTEAAADKLLAKLLGYRVFSDAAGKMNLPVSNIDGEGRAGGLLL VSQFTLAADTNSGLRPSFTPAAPPDEGARLFDYFVAAARARHPIVETGEFGADMQVSLVNDGPVTFWLQVRP
Sequences:
>Translated_152_residues MIALIQRVTRADVRVGGRTTGEIGAGLLALVCAERGDTEAAADKLLAKLLGYRVFSDAAGKMNLPVSNIDGEGRAGGLLL VSQFTLAADTNSGLRPSFTPAAPPDEGARLFDYFVAAARARHPIVETGEFGADMQVSLVNDGPVTFWLQVRP >Mature_152_residues MIALIQRVTRADVRVGGRTTGEIGAGLLALVCAERGDTEAAADKLLAKLLGYRVFSDAAGKMNLPVSNIDGEGRAGGLLL VSQFTLAADTNSGLRPSFTPAAPPDEGARLFDYFVAAARARHPIVETGEFGADMQVSLVNDGPVTFWLQVRP
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family [H]
Homologues:
Organism=Homo sapiens, GI30795227, Length=151, Percent_Identity=37.7483443708609, Blast_Score=93, Evalue=1e-19, Organism=Escherichia coli, GI1790320, Length=150, Percent_Identity=60.6666666666667, Blast_Score=180, Evalue=3e-47, Organism=Caenorhabditis elegans, GI115533292, Length=148, Percent_Identity=37.8378378378378, Blast_Score=83, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6319982, Length=150, Percent_Identity=37.3333333333333, Blast_Score=86, Evalue=2e-18, Organism=Drosophila melanogaster, GI281361569, Length=151, Percent_Identity=35.0993377483444, Blast_Score=76, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003732 [H]
Pfam domain/function: PF02580 Tyr_Deacylase [H]
EC number: NA
Molecular weight: Translated: 15998; Mature: 15998
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALIQRVTRADVRVGGRTTGEIGAGLLALVCAERGDTEAAADKLLAKLLGYRVFSDAAG CHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC KMNLPVSNIDGEGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGARLFDYFVAAARA EECCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH RHPIVETGEFGADMQVSLVNDGPVTFWLQVRP CCCCCCCCCCCCCEEEEEECCCCEEEEEEECC >Mature Secondary Structure MIALIQRVTRADVRVGGRTTGEIGAGLLALVCAERGDTEAAADKLLAKLLGYRVFSDAAG CHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC KMNLPVSNIDGEGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGARLFDYFVAAARA EECCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH RHPIVETGEFGADMQVSLVNDGPVTFWLQVRP CCCCCCCCCCCCCEEEEEECCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA