| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688522
Identifier: 116688522
GI number: 116688522
Start: 556762
End: 557334
Strand: Reverse
Name: 116688522
Synonym: Bcen2424_0498
Alternate gene names: NA
Gene position: 557334-556762 (Counterclockwise)
Preceding gene: 116688523
Following gene: 116688517
Centisome position: 16.0
GC content: 65.45
Gene sequence:
>573_bases ATGACCGACACCCGCCCCGACTCGCACGACGACATCCTCGCCGCCACGCGGCACTGGCTCGCGCGCGCGGTGATCGGGCT CAATCTGTGCCCGTTCGCGAAAAGCGTCTACGTGAAGGAACAGGTGCGCTACGCGATCAGCGAAGCGACGACCCTGGAGG ACGCGCTCGCCGAACTCGAAACCGAGCTGCGCTTGCTCGACGCGGCGGACCCGCAGCAGATCGATACGACGCTCGTGATC TACCCGCATGCGTTCGCCGATTTCGTCGACTACAACGATGCGCTGTTCTTCGCCGAGCGGCTCGTTCAGCAATTGCGGCT CGACGGCGTGCTGCAGATCGCGAGCTTCCATCCGCAATACCAGTTCGACGGCACCGAACCCGACGACATCGAGAACTACA CGAACCGCGCGCCGTATCCGATCCTGCACCTGCTGCGCGAGGACAGCATCGCGCGCGCGGTCGACGCGTTCCCGGACGCG TCCGCGATCTACGAAAAGAATCAGGAAACGCTGCGCCGCCTCGGCCACGAAGGCTGGCGCGAATGGATGCGCCGGCCGGG CGACGACGTGTGA
Upstream 100 bases:
>100_bases TGATCGAAGCCGCCTGCGCGTGACGGGCCGCGCGGGTTCGTCTGCGGCGCGCCCCGCTACAATGCAGCCCTCATAGCCCT TCCGCCCGACTGGTATCACG
Downstream 100 bases:
>100_bases CGTGTGCCGCGCGGGCGCCATGCCCGCGCACCCGCGCCGTCAGCCTTCGGCCGGCTCGACGGCGGCGTCGCCCGCCGCAG CGGCTTGCGCGACGAAGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MTDTRPDSHDDILAATRHWLARAVIGLNLCPFAKSVYVKEQVRYAISEATTLEDALAELETELRLLDAADPQQIDTTLVI YPHAFADFVDYNDALFFAERLVQQLRLDGVLQIASFHPQYQFDGTEPDDIENYTNRAPYPILHLLREDSIARAVDAFPDA SAIYEKNQETLRRLGHEGWREWMRRPGDDV
Sequences:
>Translated_190_residues MTDTRPDSHDDILAATRHWLARAVIGLNLCPFAKSVYVKEQVRYAISEATTLEDALAELETELRLLDAADPQQIDTTLVI YPHAFADFVDYNDALFFAERLVQQLRLDGVLQIASFHPQYQFDGTEPDDIENYTNRAPYPILHLLREDSIARAVDAFPDA SAIYEKNQETLRRLGHEGWREWMRRPGDDV >Mature_189_residues TDTRPDSHDDILAATRHWLARAVIGLNLCPFAKSVYVKEQVRYAISEATTLEDALAELETELRLLDAADPQQIDTTLVIY PHAFADFVDYNDALFFAERLVQQLRLDGVLQIASFHPQYQFDGTEPDDIENYTNRAPYPILHLLREDSIARAVDAFPDAS AIYEKNQETLRRLGHEGWREWMRRPGDDV
Specific function: Unknown
COG id: COG3310
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21820; Mature: 21688
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTRPDSHDDILAATRHWLARAVIGLNLCPFAKSVYVKEQVRYAISEATTLEDALAELE CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TELRLLDAADPQQIDTTLVIYPHAFADFVDYNDALFFAERLVQQLRLDGVLQIASFHPQY HHHHHHCCCCCCHHCCEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC QFDGTEPDDIENYTNRAPYPILHLLREDSIARAVDAFPDASAIYEKNQETLRRLGHEGWR CCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHH EWMRRPGDDV HHHHCCCCCC >Mature Secondary Structure TDTRPDSHDDILAATRHWLARAVIGLNLCPFAKSVYVKEQVRYAISEATTLEDALAELE CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TELRLLDAADPQQIDTTLVIYPHAFADFVDYNDALFFAERLVQQLRLDGVLQIASFHPQY HHHHHHCCCCCCHHCCEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC QFDGTEPDDIENYTNRAPYPILHLLREDSIARAVDAFPDASAIYEKNQETLRRLGHEGWR CCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHH EWMRRPGDDV HHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA