| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688330
Identifier: 116688330
GI number: 116688330
Start: 347010
End: 347789
Strand: Reverse
Name: 116688330
Synonym: Bcen2424_0306
Alternate gene names: NA
Gene position: 347789-347010 (Counterclockwise)
Preceding gene: 116688333
Following gene: 116688328
Centisome position: 9.98
GC content: 73.46
Gene sequence:
>780_bases ATGGCGACCGCGACCTTCCGCTTTCACGGCGAACTGAACGCCTTTCTCGCGCGTCAGCAGCGCGACCGGGCGTTCGCACA CGCGTGTGCCCGCGATGCGACGGTGAAGCATGCGATCGAGGCGCTCGGCGTCCCGCATACCGAAATCGGCCGGCTGTACG TGAACGACGCGCCGGCCGCGCTCGACCGGCCGCTCGACGACGGCGACCGCGTCGAAGTCTTGCCCGAACGCGCCGGGCCA GCGGCCAACGGTGCAACCGGGCCGCCACCGGCGGCATGGCGCTTCGTCGCCGACGCGCATCTCGGCGGCCTCGCGCAACT GCTGCGCCTCGCCGGCTTCGACACCTGCTACGACAACCACTACCGCGACGACGAACTCGCGGCGCTGGCCGAGCGGGAGC AGCGGATCGTGCTGACGCGCGACCGCGAGCTGCTCAAGCGGCGCGCGGTCGTGCGCGGCTGCTACCTGCATGCGCTGCAG CCGGCCGACCAGTTGCGCGAACTGTTCGAGCGGCTCGATCTCGCGCCGCACATGCGGCCGTTCCGGCTGTGCCTGCGCTG CAATGCGCCGCTGCATCCGCTCGACGCGGCCGCCGCCGCGCCGAGCGTGCCGGCCGGCGTCCGGCTGCGCCACCGGCGCT TCGCCGCATGCGACGTGTGCCGGCGCGTGTTCTGGGAAGGTTCGCACTGGCGGCGCATGCGCGCGGTGGTCGACGCGATG CGCACGCCATCGCCCGTCCGGCGCGACGGAGCGGGCGGACCCGACGAACCCGGCGCCTGA
Upstream 100 bases:
>100_bases CCATGTCCCGCTCCTTCGCTCCGTGAAGCGGCGAGTTAAACACAGATGCCGGCGCGCTGCAGCGCCTGCCGCCGGCCGGG CGCGGTGCGATACTGCACGG
Downstream 100 bases:
>100_bases AAAAACAAAACCCCGCATGCCGGAGCATGCGGGGTTGGCCGACCGATGGCCGGCAACGCCGGCCGTGGCGGCGAGCCGCT TAGTTCTGCGTGCCTGCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MATATFRFHGELNAFLARQQRDRAFAHACARDATVKHAIEALGVPHTEIGRLYVNDAPAALDRPLDDGDRVEVLPERAGP AANGATGPPPAAWRFVADAHLGGLAQLLRLAGFDTCYDNHYRDDELAALAEREQRIVLTRDRELLKRRAVVRGCYLHALQ PADQLRELFERLDLAPHMRPFRLCLRCNAPLHPLDAAAAAPSVPAGVRLRHRRFAACDVCRRVFWEGSHWRRMRAVVDAM RTPSPVRRDGAGGPDEPGA
Sequences:
>Translated_259_residues MATATFRFHGELNAFLARQQRDRAFAHACARDATVKHAIEALGVPHTEIGRLYVNDAPAALDRPLDDGDRVEVLPERAGP AANGATGPPPAAWRFVADAHLGGLAQLLRLAGFDTCYDNHYRDDELAALAEREQRIVLTRDRELLKRRAVVRGCYLHALQ PADQLRELFERLDLAPHMRPFRLCLRCNAPLHPLDAAAAAPSVPAGVRLRHRRFAACDVCRRVFWEGSHWRRMRAVVDAM RTPSPVRRDGAGGPDEPGA >Mature_258_residues ATATFRFHGELNAFLARQQRDRAFAHACARDATVKHAIEALGVPHTEIGRLYVNDAPAALDRPLDDGDRVEVLPERAGPA ANGATGPPPAAWRFVADAHLGGLAQLLRLAGFDTCYDNHYRDDELAALAEREQRIVLTRDRELLKRRAVVRGCYLHALQP ADQLRELFERLDLAPHMRPFRLCLRCNAPLHPLDAAAAAPSVPAGVRLRHRRFAACDVCRRVFWEGSHWRRMRAVVDAMR TPSPVRRDGAGGPDEPGA
Specific function: Unknown
COG id: COG1656
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28762; Mature: 28631
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATATFRFHGELNAFLARQQRDRAFAHACARDATVKHAIEALGVPHTEIGRLYVNDAPAA CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEECCCCHH LDRPLDDGDRVEVLPERAGPAANGATGPPPAAWRFVADAHLGGLAQLLRLAGFDTCYDNH HCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC YRDDELAALAEREQRIVLTRDRELLKRRAVVRGCYLHALQPADQLRELFERLDLAPHMRP CCCHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH FRLCLRCNAPLHPLDAAAAAPSVPAGVRLRHRRFAACDVCRRVFWEGSHWRRMRAVVDAM HHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH RTPSPVRRDGAGGPDEPGA HCCCCCHHCCCCCCCCCCC >Mature Secondary Structure ATATFRFHGELNAFLARQQRDRAFAHACARDATVKHAIEALGVPHTEIGRLYVNDAPAA CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCEEEECCCCHH LDRPLDDGDRVEVLPERAGPAANGATGPPPAAWRFVADAHLGGLAQLLRLAGFDTCYDNH HCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC YRDDELAALAEREQRIVLTRDRELLKRRAVVRGCYLHALQPADQLRELFERLDLAPHMRP CCCHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH FRLCLRCNAPLHPLDAAAAAPSVPAGVRLRHRRFAACDVCRRVFWEGSHWRRMRAVVDAM HHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH RTPSPVRRDGAGGPDEPGA HCCCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA