Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is 116688251

Identifier: 116688251

GI number: 116688251

Start: 264002

End: 264583

Strand: Direct

Name: 116688251

Synonym: Bcen2424_0227

Alternate gene names: NA

Gene position: 264002-264583 (Clockwise)

Preceding gene: 116688249

Following gene: 116688252

Centisome position: 7.58

GC content: 59.62

Gene sequence:

>582_bases
ATGTCCGATACCGTGGAGAACGACAGTCGGCTGAGCAAACGCGAGGTCGAGGAGGAGTTGCAGAAGCTTAGCGAAGCTGA
CTGGACGCGGGCGGAGATTTATGCCGACTTCTTGTCGAGAAGCCTCGCCGGGTGCGACGGCAACGACTTACTGCAAATGG
CGATGGAAAAGTTTCTCAACATGCGCCGCAGGTGGCCGAGGGGCCTCGAACCGCTCAAGGCCTTGTTCGGCGCGATGAGG
AGCATTTCTTCGAATGAGCTGAAGAAAGAGACGAACGGTCCAATCGATACGTTCGCGGTCGTATCGACGACCGACGAGTC
TCCCGACGAGGGGCAGGTCCAGCCGTACGCGGTCGCAACGACTCTGGAGACCCCGGAAGACGTGCTCGTCGGGCGGCAAC
TGGTCGAGCAGATTGAAGCGGAACTTTCCGACGACGAGGAAGCTGGTTTGTTATTTATGTTTTGGATTGAGGGAACACGC
GGGGCCGAAGCGGCCGCCGAATTGGGTTGGGACCAGAAGCGCTTTGACGCGGCGAGAAAGCGCCTGCTGCGTCGGCTCGC
ACCTCACGATAGGCAGGGGTGA

Upstream 100 bases:

>100_bases
CAGGACTCTTGAGAAGCAGTCCGTGGACGCCGGCAGAAATTTTTTTTCTCGCGTCCACCGAAGGCGGTTGAAGAGTCATA
TTTCAGGAGCGGGTACGGGG

Downstream 100 bases:

>100_bases
AGCAATGAATATAACGAAGAAACCCGAGCCATTCGACCATCTAGCTGACGCCTTGGAGCGTGAGCTCCTGAACATGTCCG
ACGAAGACGTCCTTGAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSDTVENDSRLSKREVEEELQKLSEADWTRAEIYADFLSRSLAGCDGNDLLQMAMEKFLNMRRRWPRGLEPLKALFGAMR
SISSNELKKETNGPIDTFAVVSTTDESPDEGQVQPYAVATTLETPEDVLVGRQLVEQIEAELSDDEEAGLLFMFWIEGTR
GAEAAAELGWDQKRFDAARKRLLRRLAPHDRQG

Sequences:

>Translated_193_residues
MSDTVENDSRLSKREVEEELQKLSEADWTRAEIYADFLSRSLAGCDGNDLLQMAMEKFLNMRRRWPRGLEPLKALFGAMR
SISSNELKKETNGPIDTFAVVSTTDESPDEGQVQPYAVATTLETPEDVLVGRQLVEQIEAELSDDEEAGLLFMFWIEGTR
GAEAAAELGWDQKRFDAARKRLLRRLAPHDRQG
>Mature_192_residues
SDTVENDSRLSKREVEEELQKLSEADWTRAEIYADFLSRSLAGCDGNDLLQMAMEKFLNMRRRWPRGLEPLKALFGAMRS
ISSNELKKETNGPIDTFAVVSTTDESPDEGQVQPYAVATTLETPEDVLVGRQLVEQIEAELSDDEEAGLLFMFWIEGTRG
AEAAAELGWDQKRFDAARKRLLRRLAPHDRQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21838; Mature: 21706

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTVENDSRLSKREVEEELQKLSEADWTRAEIYADFLSRSLAGCDGNDLLQMAMEKFLN
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MRRRWPRGLEPLKALFGAMRSISSNELKKETNGPIDTFAVVSTTDESPDEGQVQPYAVAT
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCCCEEEEE
TLETPEDVLVGRQLVEQIEAELSDDEEAGLLFMFWIEGTRGAEAAAELGWDQKRFDAARK
ECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHCCCCHHHHHHHHH
RLLRRLAPHDRQG
HHHHHHCCCCCCC
>Mature Secondary Structure 
SDTVENDSRLSKREVEEELQKLSEADWTRAEIYADFLSRSLAGCDGNDLLQMAMEKFLN
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MRRRWPRGLEPLKALFGAMRSISSNELKKETNGPIDTFAVVSTTDESPDEGQVQPYAVAT
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCCCEEEEE
TLETPEDVLVGRQLVEQIEAELSDDEEAGLLFMFWIEGTRGAEAAAELGWDQKRFDAARK
ECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHCCCCHHHHHHHHH
RLLRRLAPHDRQG
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA