| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688209
Identifier: 116688209
GI number: 116688209
Start: 206895
End: 208103
Strand: Direct
Name: 116688209
Synonym: Bcen2424_0185
Alternate gene names: NA
Gene position: 206895-208103 (Clockwise)
Preceding gene: 116688208
Following gene: 116688210
Centisome position: 5.94
GC content: 59.88
Gene sequence:
>1209_bases ATGTCTTTCGAAGAAGACGACTTCAGCACCATGTACGAATACATCGATTGGACGACGAACACCGAGGGTGCCGTGATCGA TGGCACGGAGAAGACGTGCCTGCGTACGGAGTTCGGCCTGTTGAGGACGATCCTCATCTCCATGGAAGCGATGGTGCGTG AGATCGAGTTCGACAAGCATAGCGTCGGCTTCGACATCAAGACGAATCCTCGCGGCAAGGTGAGCGTGACGCCGAAGGCG AAGACCGGGACCTTGAAGTACTACCGCTGCCTCAGCACGTTCTTGCGCAACTACGCGCACGCGGAGCGTCGTGTCTACAG CCCCCACGTGCAGGTAGTTGTCGAAGCGCTGGATGCCGTGGGCCTGGAGCCGTATGGCTTCCGCTTCGGCGAGCCGGGTG CGCGCGAGGTCAGCTGCGGCAAGACGCACGGTGAGATCTTCAACGAGGTGGTCGCCAAGGTGGGCGAGATCGTTGCGTCG ACGGCATTCAAGGAGCGTGTGCGGGTGCGTAAGCGTAATGCCGCGCGTAACGAGGCGAAGGGGCTGGCGATCGAGCAGAA GGTGTTCGAGAACAAGTCGCGTCAGCTCGTGCTGATGCTGCACTTCGGCTTCCAGAAGGCATACCGTCAGCAGGTCACGT TCGAAGAGATCCAGGCATACCGCACGAAGTTCTTCAACAACTGCCGCACCAACAAGCTGCTGCGCGGCATTGTGGATTAC ATCTGGAAGCTCGAGGAGGGCGACGAGTCCGGTCTGCACCTCCACGTGCTGATTTTCTACACCGCTGATTCGTGCCGCGA CGTGTATATCGCGCAGCAGTTGGGCGAGTACTGGAAAGAAACGGCGACCGACGGCAAAGGCCAGTACTGGAACTCGAACG CCCACAAGGCATTTCACGAGAAGTACGGTCACGGTGTCGGCACGGGCGAGATCAACTGGGACGATGACGCCAAGCGCGAA GCGCTGCGCGAGAACATCCGCTACATGACCAAGGCCGATCAGTTCCTCAAGATGAAGTACGGCGAACGTAGCCGTTTGTT CGGCACGAGCCAGGTCGAGGAAAAGAAGAAGCCGGGCCGTCCGCGTGTGGTGAAGCCGAAGGGCAAGGGTGATCCGGCAG GCAGCGCGCAGGCGGATTTGCGCAATTCCGACTCGCTCGATGACACGGGTGTGGACGCGGCAAACCCGGGTGCGGGCCAG AATGATTAA
Upstream 100 bases:
>100_bases ATGAGCATCGAATGCTCATCACCATGAATTAATCAGACACGAAGCAGGATGCAGCACTCGTGATGCGCTCCTGCTTAAGA ACATTGAAAGGTGATCAATC
Downstream 100 bases:
>100_bases ATAGGGCTATAACAGTCTTCGCGCGTCGGACGGCTGTGGGTTGTGGGCGATGTCTCGCGAAGGCCGCCAGAGGGCTGTAA TCGCCTCCTGGCGGTCATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MSFEEDDFSTMYEYIDWTTNTEGAVIDGTEKTCLRTEFGLLRTILISMEAMVREIEFDKHSVGFDIKTNPRGKVSVTPKA KTGTLKYYRCLSTFLRNYAHAERRVYSPHVQVVVEALDAVGLEPYGFRFGEPGAREVSCGKTHGEIFNEVVAKVGEIVAS TAFKERVRVRKRNAARNEAKGLAIEQKVFENKSRQLVLMLHFGFQKAYRQQVTFEEIQAYRTKFFNNCRTNKLLRGIVDY IWKLEEGDESGLHLHVLIFYTADSCRDVYIAQQLGEYWKETATDGKGQYWNSNAHKAFHEKYGHGVGTGEINWDDDAKRE ALRENIRYMTKADQFLKMKYGERSRLFGTSQVEEKKKPGRPRVVKPKGKGDPAGSAQADLRNSDSLDDTGVDAANPGAGQ ND
Sequences:
>Translated_402_residues MSFEEDDFSTMYEYIDWTTNTEGAVIDGTEKTCLRTEFGLLRTILISMEAMVREIEFDKHSVGFDIKTNPRGKVSVTPKA KTGTLKYYRCLSTFLRNYAHAERRVYSPHVQVVVEALDAVGLEPYGFRFGEPGAREVSCGKTHGEIFNEVVAKVGEIVAS TAFKERVRVRKRNAARNEAKGLAIEQKVFENKSRQLVLMLHFGFQKAYRQQVTFEEIQAYRTKFFNNCRTNKLLRGIVDY IWKLEEGDESGLHLHVLIFYTADSCRDVYIAQQLGEYWKETATDGKGQYWNSNAHKAFHEKYGHGVGTGEINWDDDAKRE ALRENIRYMTKADQFLKMKYGERSRLFGTSQVEEKKKPGRPRVVKPKGKGDPAGSAQADLRNSDSLDDTGVDAANPGAGQ ND >Mature_401_residues SFEEDDFSTMYEYIDWTTNTEGAVIDGTEKTCLRTEFGLLRTILISMEAMVREIEFDKHSVGFDIKTNPRGKVSVTPKAK TGTLKYYRCLSTFLRNYAHAERRVYSPHVQVVVEALDAVGLEPYGFRFGEPGAREVSCGKTHGEIFNEVVAKVGEIVAST AFKERVRVRKRNAARNEAKGLAIEQKVFENKSRQLVLMLHFGFQKAYRQQVTFEEIQAYRTKFFNNCRTNKLLRGIVDYI WKLEEGDESGLHLHVLIFYTADSCRDVYIAQQLGEYWKETATDGKGQYWNSNAHKAFHEKYGHGVGTGEINWDDDAKREA LRENIRYMTKADQFLKMKYGERSRLFGTSQVEEKKKPGRPRVVKPKGKGDPAGSAQADLRNSDSLDDTGVDAANPGAGQN D
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45727; Mature: 45596
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFEEDDFSTMYEYIDWTTNTEGAVIDGTEKTCLRTEFGLLRTILISMEAMVREIEFDKH CCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SVGFDIKTNPRGKVSVTPKAKTGTLKYYRCLSTFLRNYAHAERRVYSPHVQVVVEALDAV CCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC GLEPYGFRFGEPGAREVSCGKTHGEIFNEVVAKVGEIVASTAFKERVRVRKRNAARNEAK CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLAIEQKVFENKSRQLVLMLHFGFQKAYRQQVTFEEIQAYRTKFFNNCRTNKLLRGIVDY CCHHHHHHHCCCCCEEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH IWKLEEGDESGLHLHVLIFYTADSCRDVYIAQQLGEYWKETATDGKGQYWNSNAHKAFHE HHHHCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH KYGHGVGTGEINWDDDAKREALRENIRYMTKADQFLKMKYGERSRLFGTSQVEEKKKPGR HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHCCCCC PRVVKPKGKGDPAGSAQADLRNSDSLDDTGVDAANPGAGQND CCEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SFEEDDFSTMYEYIDWTTNTEGAVIDGTEKTCLRTEFGLLRTILISMEAMVREIEFDKH CCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SVGFDIKTNPRGKVSVTPKAKTGTLKYYRCLSTFLRNYAHAERRVYSPHVQVVVEALDAV CCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC GLEPYGFRFGEPGAREVSCGKTHGEIFNEVVAKVGEIVASTAFKERVRVRKRNAARNEAK CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLAIEQKVFENKSRQLVLMLHFGFQKAYRQQVTFEEIQAYRTKFFNNCRTNKLLRGIVDY CCHHHHHHHCCCCCEEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH IWKLEEGDESGLHLHVLIFYTADSCRDVYIAQQLGEYWKETATDGKGQYWNSNAHKAFHE HHHHCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH KYGHGVGTGEINWDDDAKREALRENIRYMTKADQFLKMKYGERSRLFGTSQVEEKKKPGR HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHCCCCC PRVVKPKGKGDPAGSAQADLRNSDSLDDTGVDAANPGAGQND CCEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA