| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688210
Identifier: 116688210
GI number: 116688210
Start: 208321
End: 209628
Strand: Direct
Name: 116688210
Synonym: Bcen2424_0186
Alternate gene names: NA
Gene position: 208321-209628 (Clockwise)
Preceding gene: 116688209
Following gene: 116688211
Centisome position: 5.98
GC content: 65.67
Gene sequence:
>1308_bases ATGAACAAAATCAATCTCAAGCCGGTGGCGGATGATCTGCCGGACACGAGCGATGGCACTGCTGTCGCAATGCCGCGCGT GATGTGGTGGACGGCGTTGGTGGCGGCGTTGTTCGCCTCCGCCATCTCGCTGGGGATCAACGTGTACGCCGGGATGCTTC GTGCCGGTACAGTAACGGAGCAGATTTGTACCGTTGCAACTTCGCTCGTGGCGGCGCTCTGCATGTATCTCGCGCCGATG CTCTGGCGGTTCGCGCCGACGCGTGCCCGCGTTGTGCTGGCTGTCCTGTGGCTGCTCGCCGTGTGCGGCGTGCTCAGAGG GCAGGTGGACGTCCTGGCGTTTGCGAATGTGCATGCGGCCGACGAGCGGGCGCAGACGGTCGCCGTAGTCGCGGTACCGT CGGTCGCGACCGGGCCCGCCGGTCGTAACCTGATGGCAATCGAGCAGGACATTGCCAAGGTCAGCATCGAAATGGCACAC GTTGACGCACGTCGCTGCATGGGCGAGTGCCGGTCTTTGCGTCTGCGCAAGGCGGAGCTTTCGGCGCAGCTCGCCGTGCT CAATGCTGAGGCGGATGAGGCGAAGCGCCGAGCGACCGAGCAGGACTGGCGTCGCGACCAGGTCAGTCGCGCGCAGGAGC TGAGCGAGTCGCGTCGCGCCGAGCCCGGTACTGCGCTGGTCGCGCCGTGGCTCGGCACGACCGAAGCGCGACTGGACCTG CTGATGAATTTCGTGCTGGTGGTCGTGCTTGAAGGGACGGCTTGCTACTGCTGGTACGTCGTGGGACTCGGGGCAGTCGC GACTCGTCGCGCGGCAGTCGTAGACGACCGGAGTACGACCATGCTGGAGTCGCCGCCGGTCATGCCGATGCCGGAACCGC CACAAGGCGATCGTGACGGTCAGGACACGACTCAAGCGGCAGGTGTTGAACCTCAGCCGGTCGCGTCGAGTCGCGCGGTA GTCGCATCCGAGCGAAATGCGACTGTGTCGCGACTGGAGGTAGTCGCACCGATAGGGAAAGCGCGACTGGCTGATCGTGT CGATCAGTCCGCGACTCACGCTGCGACCCTTACCGACGAGGAGGCGGTCGTAAACGACGCCAGTCCGGGCGTTGCCACGC CGGACGACGACCGGCTGGTCGCCGAGATCCGCGAAGCCGTCGTCGCCGGTCGTCTGAAGCGCAATCTCATGTCGATCCGG GCGTTTGTTGGATGTGCGCAATCCAGGGCGGTCCGGTTGAACCGTCTGTACGTCGAGCGCTTCGGTAAGGCGCGGTCTCC GGAAGCGGGTGCGGTCGGCGCCGCGTGA
Upstream 100 bases:
>100_bases TGCAATAGCGTGCTACGAACTGCTGGGCATACCCTGAAGGCGCAAGGTGATGCAACGGGAGGCTTCAGCGTGCGTCGGTC GCACGGGAAGGAACAGAACG
Downstream 100 bases:
>100_bases GTTATCGGCGAACTGGTGGAGCAGAACGGGGAAATTCTCGTCGCGCGTGTGAAGTGTCGCGTTCGCTGCCGAGCATTCGC GCACAGCTCAAATAGCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MNKINLKPVADDLPDTSDGTAVAMPRVMWWTALVAALFASAISLGINVYAGMLRAGTVTEQICTVATSLVAALCMYLAPM LWRFAPTRARVVLAVLWLLAVCGVLRGQVDVLAFANVHAADERAQTVAVVAVPSVATGPAGRNLMAIEQDIAKVSIEMAH VDARRCMGECRSLRLRKAELSAQLAVLNAEADEAKRRATEQDWRRDQVSRAQELSESRRAEPGTALVAPWLGTTEARLDL LMNFVLVVVLEGTACYCWYVVGLGAVATRRAAVVDDRSTTMLESPPVMPMPEPPQGDRDGQDTTQAAGVEPQPVASSRAV VASERNATVSRLEVVAPIGKARLADRVDQSATHAATLTDEEAVVNDASPGVATPDDDRLVAEIREAVVAGRLKRNLMSIR AFVGCAQSRAVRLNRLYVERFGKARSPEAGAVGAA
Sequences:
>Translated_435_residues MNKINLKPVADDLPDTSDGTAVAMPRVMWWTALVAALFASAISLGINVYAGMLRAGTVTEQICTVATSLVAALCMYLAPM LWRFAPTRARVVLAVLWLLAVCGVLRGQVDVLAFANVHAADERAQTVAVVAVPSVATGPAGRNLMAIEQDIAKVSIEMAH VDARRCMGECRSLRLRKAELSAQLAVLNAEADEAKRRATEQDWRRDQVSRAQELSESRRAEPGTALVAPWLGTTEARLDL LMNFVLVVVLEGTACYCWYVVGLGAVATRRAAVVDDRSTTMLESPPVMPMPEPPQGDRDGQDTTQAAGVEPQPVASSRAV VASERNATVSRLEVVAPIGKARLADRVDQSATHAATLTDEEAVVNDASPGVATPDDDRLVAEIREAVVAGRLKRNLMSIR AFVGCAQSRAVRLNRLYVERFGKARSPEAGAVGAA >Mature_435_residues MNKINLKPVADDLPDTSDGTAVAMPRVMWWTALVAALFASAISLGINVYAGMLRAGTVTEQICTVATSLVAALCMYLAPM LWRFAPTRARVVLAVLWLLAVCGVLRGQVDVLAFANVHAADERAQTVAVVAVPSVATGPAGRNLMAIEQDIAKVSIEMAH VDARRCMGECRSLRLRKAELSAQLAVLNAEADEAKRRATEQDWRRDQVSRAQELSESRRAEPGTALVAPWLGTTEARLDL LMNFVLVVVLEGTACYCWYVVGLGAVATRRAAVVDDRSTTMLESPPVMPMPEPPQGDRDGQDTTQAAGVEPQPVASSRAV VASERNATVSRLEVVAPIGKARLADRVDQSATHAATLTDEEAVVNDASPGVATPDDDRLVAEIREAVVAGRLKRNLMSIR AFVGCAQSRAVRLNRLYVERFGKARSPEAGAVGAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46529; Mature: 46529
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKINLKPVADDLPDTSDGTAVAMPRVMWWTALVAALFASAISLGINVYAGMLRAGTVTE CCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH QICTVATSLVAALCMYLAPMLWRFAPTRARVVLAVLWLLAVCGVLRGQVDVLAFANVHAA HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCHHH DERAQTVAVVAVPSVATGPAGRNLMAIEQDIAKVSIEMAHVDARRCMGECRSLRLRKAEL HHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAQLAVLNAEADEAKRRATEQDWRRDQVSRAQELSESRRAEPGTALVAPWLGTTEARLDL HHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH LMNFVLVVVLEGTACYCWYVVGLGAVATRRAAVVDDRSTTMLESPPVMPMPEPPQGDRDG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCCCCCCCCCCCCCC QDTTQAAGVEPQPVASSRAVVASERNATVSRLEVVAPIGKARLADRVDQSATHAATLTDE CCHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHEECCCC EAVVNDASPGVATPDDDRLVAEIREAVVAGRLKRNLMSIRAFVGCAQSRAVRLNRLYVER HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGKARSPEAGAVGAA HCCCCCCCCCCCCCC >Mature Secondary Structure MNKINLKPVADDLPDTSDGTAVAMPRVMWWTALVAALFASAISLGINVYAGMLRAGTVTE CCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH QICTVATSLVAALCMYLAPMLWRFAPTRARVVLAVLWLLAVCGVLRGQVDVLAFANVHAA HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCHHH DERAQTVAVVAVPSVATGPAGRNLMAIEQDIAKVSIEMAHVDARRCMGECRSLRLRKAEL HHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAQLAVLNAEADEAKRRATEQDWRRDQVSRAQELSESRRAEPGTALVAPWLGTTEARLDL HHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH LMNFVLVVVLEGTACYCWYVVGLGAVATRRAAVVDDRSTTMLESPPVMPMPEPPQGDRDG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCCCCCCCCCCCCCC QDTTQAAGVEPQPVASSRAVVASERNATVSRLEVVAPIGKARLADRVDQSATHAATLTDE CCHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHEECCCC EAVVNDASPGVATPDDDRLVAEIREAVVAGRLKRNLMSIRAFVGCAQSRAVRLNRLYVER HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGKARSPEAGAVGAA HCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA