| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688191
Identifier: 116688191
GI number: 116688191
Start: 185870
End: 187057
Strand: Reverse
Name: 116688191
Synonym: Bcen2424_0167
Alternate gene names: NA
Gene position: 187057-185870 (Counterclockwise)
Preceding gene: 116688193
Following gene: 116688190
Centisome position: 5.37
GC content: 71.38
Gene sequence:
>1188_bases ATGCCTGCACGCCGCGGATCCAATGGCGCACTCGTGGTCGCCCACGTCGCGGGGATGATCGATCTGGTCGCGCTGCCCGT CTGGGTCAATACACTGATCGAACATTTTCATTTCGACGCGCAAAGCGCGGGCGCGCTCGCCACCGCCTATCTCGCGTGCG CGGTGCTGTGCTCGGTGTGCATCGCGCCGCTGATCACGCGCGTGCCCGGCCGCCTGAGCGCCGCGGCCGGCTTCGCGCTC GCCGCCTGCGGCTTCGGCGTGGCCGCGCACAGCGCGAGCTTCGTCGGCATGCTCGGCGCGCATGCGCTGGCGGGCCTCGG CATCGGCTGCGGACTGTCGGTCGCGCACGGCGCGATCGGCCGCAGCCCCAACCCGCATCGTCTGTTCGCGCTGAGCCACC TCGCTCTCGCGCTGTTCGGCGTCGGCTACTTCGCGGTGGTCCCGGCGCTGATCGCCGCCGACGGCGGCGCCGCGCTGTTC AGCGCGTTCGTCGTGCTGTCCGGCGTCGCCGCGCTGGCGCTCGCGCTCGCGTGGCCGGCCCGCACGTCAGCCGGTGCAGC GGCCGCGGATGCGACCTCGCATCCGGCGGCTCCCACCGCCACCACCGGCGCGCGGCTCGAACGCGGCTGCTGGAGCGCGA TCATCGGCATCGTCTTCATGGCGGTCAATCAGGCGATGGTGTTCAGCTTCGTGCAGCGGATCGGCCTCAGCCGCGGCTTC GGCGACGCGCACGTGAACGCGGTGCTGGTCGCGGTCGGCCTCGTCAATCTGCTGCCGCCCGTGCTAGCCGCGCTGCTGCA ACGCAAGCTCGACGCGCGCAACGTCGCGCTCGCCGGCCCGCTCGCGCAAGCGCTGCTCGCATGGGTGATCAGCAATACGA CGTCGTTCGCGCCGTATGCGGTCGCGGTCAGTCTGTGGGTGTTCGCGATGATCTTCACGCACACGTTCCTGTTCGGCTTT CTCGCGAAGCTGGACGCGAGCGGCCGCGCGGTCGCCTACACGCCAGCGATGCTGATGGCGGGCTCCGCGCTCGGGCCGCT TCTCGGCGGGGTGCTGATCGTGCGCTTCGGCTTTGGCGCGCTCGGCGTCGCCGCGCTCGTGATCGGCGCGCTCAGCCTGT TGTTCTTCAGCCGTCTGCGCGCGCTCGCCGTCGCGCAGACGGCGTTCGACCTGCCTCCGGCACGTTGA
Upstream 100 bases:
>100_bases ATGTGGCATCGCGAAACACGTCGGCCGGGCCCGCGCCGAGACCCTACACTTTCGCCACGCGCCGCCTGGTGCGCGATTCC AAAATCACACGGAGACACAC
Downstream 100 bases:
>100_bases CTTTTTCTCTCTGGCAAATCACTTGAGGCCCCGACAATGGCAGGCATAGTTTTCACCAACGTTCGTGTGTTCGACGGCAG CGGCAGCGCGCCGTTTCCAT
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Permease; Facilitator Superfamily Protein; Permease; Permeases Of Facilitator Superfamily
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MPARRGSNGALVVAHVAGMIDLVALPVWVNTLIEHFHFDAQSAGALATAYLACAVLCSVCIAPLITRVPGRLSAAAGFAL AACGFGVAAHSASFVGMLGAHALAGLGIGCGLSVAHGAIGRSPNPHRLFALSHLALALFGVGYFAVVPALIAADGGAALF SAFVVLSGVAALALALAWPARTSAGAAAADATSHPAAPTATTGARLERGCWSAIIGIVFMAVNQAMVFSFVQRIGLSRGF GDAHVNAVLVAVGLVNLLPPVLAALLQRKLDARNVALAGPLAQALLAWVISNTTSFAPYAVAVSLWVFAMIFTHTFLFGF LAKLDASGRAVAYTPAMLMAGSALGPLLGGVLIVRFGFGALGVAALVIGALSLLFFSRLRALAVAQTAFDLPPAR
Sequences:
>Translated_395_residues MPARRGSNGALVVAHVAGMIDLVALPVWVNTLIEHFHFDAQSAGALATAYLACAVLCSVCIAPLITRVPGRLSAAAGFAL AACGFGVAAHSASFVGMLGAHALAGLGIGCGLSVAHGAIGRSPNPHRLFALSHLALALFGVGYFAVVPALIAADGGAALF SAFVVLSGVAALALALAWPARTSAGAAAADATSHPAAPTATTGARLERGCWSAIIGIVFMAVNQAMVFSFVQRIGLSRGF GDAHVNAVLVAVGLVNLLPPVLAALLQRKLDARNVALAGPLAQALLAWVISNTTSFAPYAVAVSLWVFAMIFTHTFLFGF LAKLDASGRAVAYTPAMLMAGSALGPLLGGVLIVRFGFGALGVAALVIGALSLLFFSRLRALAVAQTAFDLPPAR >Mature_394_residues PARRGSNGALVVAHVAGMIDLVALPVWVNTLIEHFHFDAQSAGALATAYLACAVLCSVCIAPLITRVPGRLSAAAGFALA ACGFGVAAHSASFVGMLGAHALAGLGIGCGLSVAHGAIGRSPNPHRLFALSHLALALFGVGYFAVVPALIAADGGAALFS AFVVLSGVAALALALAWPARTSAGAAAADATSHPAAPTATTGARLERGCWSAIIGIVFMAVNQAMVFSFVQRIGLSRGFG DAHVNAVLVAVGLVNLLPPVLAALLQRKLDARNVALAGPLAQALLAWVISNTTSFAPYAVAVSLWVFAMIFTHTFLFGFL AKLDASGRAVAYTPAMLMAGSALGPLLGGVLIVRFGFGALGVAALVIGALSLLFFSRLRALAVAQTAFDLPPAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39920; Mature: 39788
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARRGSNGALVVAHVAGMIDLVALPVWVNTLIEHFHFDAQSAGALATAYLACAVLCSVC CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH IAPLITRVPGRLSAAAGFALAACGFGVAAHSASFVGMLGAHALAGLGIGCGLSVAHGAIG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC RSPNPHRLFALSHLALALFGVGYFAVVPALIAADGGAALFSAFVVLSGVAALALALAWPA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC RTSAGAAAADATSHPAAPTATTGARLERGCWSAIIGIVFMAVNQAMVFSFVQRIGLSRGF CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GDAHVNAVLVAVGLVNLLPPVLAALLQRKLDARNVALAGPLAQALLAWVISNTTSFAPYA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHH VAVSLWVFAMIFTHTFLFGFLAKLDASGRAVAYTPAMLMAGSALGPLLGGVLIVRFGFGA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCHHHHHHHHHHHHHHCCHH LGVAALVIGALSLLFFSRLRALAVAQTAFDLPPAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PARRGSNGALVVAHVAGMIDLVALPVWVNTLIEHFHFDAQSAGALATAYLACAVLCSVC CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH IAPLITRVPGRLSAAAGFALAACGFGVAAHSASFVGMLGAHALAGLGIGCGLSVAHGAIG HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC RSPNPHRLFALSHLALALFGVGYFAVVPALIAADGGAALFSAFVVLSGVAALALALAWPA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC RTSAGAAAADATSHPAAPTATTGARLERGCWSAIIGIVFMAVNQAMVFSFVQRIGLSRGF CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GDAHVNAVLVAVGLVNLLPPVLAALLQRKLDARNVALAGPLAQALLAWVISNTTSFAPYA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHH VAVSLWVFAMIFTHTFLFGFLAKLDASGRAVAYTPAMLMAGSALGPLLGGVLIVRFGFGA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCHHHHHHHHHHHHHHCCHH LGVAALVIGALSLLFFSRLRALAVAQTAFDLPPAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA