| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688173
Identifier: 116688173
GI number: 116688173
Start: 163959
End: 164666
Strand: Reverse
Name: 116688173
Synonym: Bcen2424_0149
Alternate gene names: NA
Gene position: 164666-163959 (Counterclockwise)
Preceding gene: 116688175
Following gene: 116688172
Centisome position: 4.73
GC content: 75.56
Gene sequence:
>708_bases ATGGGATACCCGTTCGCCACCGCTGCTCTCGGCCCGCTGCTGTTCGCACAAGGGCGCTACGTGCGCCGCGTCACACCGCG GCTGCCCGAGGCGGCCGGCCCGCGCGACGGCGTGGCCGGGGACGGTCCGCCGCTGCGCGTGCTGGTGGTCGGCGATTCGG CCGCCGCGGGCGTCGGGGTCGCGACGCAGCACGATGCGCTCGCCGGGCAACTGGCGAACGCGCTGGCGGCCACGCATCGC GTGCATTGGAAACTGCTCGCGCGCACCGGCCTGACCACGCGGGAGCTGGTCGACTGGCTCGCCGCGGAGCCGGCCGAGCC GTTCGACGTGGCCGTGACGTCGCTCGGCGTCAACGACGTGACGGGCGGCGTGCCGCCCGCACGCTGGCTCGCGCAGCAGG CCGAGCTGGTGCGGCTGCTCGCCACGCGTTTCCAGGTCGGGCACGCGATCCTGTCGGCAGTGCCGCCGATGGAGCGCTTC CCGGCGCTGCCGCAACCGCTCGCGTGGTATCTGGGGCGGCGCGCGAAGCGGCTCAACGCGGCGCTCGCCGGCTGGGCTGG CGGGCAACCGCACTGCACGTTCCTGCGGGTCGACCTGCCGCTCGAACGCCACTTGATGGCCGCCGACGGCTTCCATCCCG GCACAGCCGCGTGCGCGGTGTGGGCCGCACAGGTCGCGGCCGCCGTGCGGCAGCGGCCGGGCGGATGA
Upstream 100 bases:
>100_bases CGGGCCCTGTTCGCGCTGCGATCGGACACAATATGCACTCCCCCGGCGGCACCCGCGCCGGCCCGCTTCAATGCGTTTCA ACCACCGCAGGATCGACCTC
Downstream 100 bases:
>100_bases TGGGGCACGTTCGGGGGCTGACTGCCGCCACGGCTTGCCGGGGGTTGGGAGCCGGGAGCCGGGAGCCGGGAGCCGGGAGC CGGGAGCCGGGAGCCGGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: GDSL-Like Lipase/Acylhydrolase Domain-Containing Protein; GDSL-Like Lipase/Acylhydrolase; GDSL Family Lipase; SGNH Hydrolase; Lysophospholipase; Lysophospholipase L1 And Related Esterase-Like Protein; Lipolytic Protein G-D-S-L Family; G-D-S-L Lipolytic Protein
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MGYPFATAALGPLLFAQGRYVRRVTPRLPEAAGPRDGVAGDGPPLRVLVVGDSAAAGVGVATQHDALAGQLANALAATHR VHWKLLARTGLTTRELVDWLAAEPAEPFDVAVTSLGVNDVTGGVPPARWLAQQAELVRLLATRFQVGHAILSAVPPMERF PALPQPLAWYLGRRAKRLNAALAGWAGGQPHCTFLRVDLPLERHLMAADGFHPGTAACAVWAAQVAAAVRQRPGG
Sequences:
>Translated_235_residues MGYPFATAALGPLLFAQGRYVRRVTPRLPEAAGPRDGVAGDGPPLRVLVVGDSAAAGVGVATQHDALAGQLANALAATHR VHWKLLARTGLTTRELVDWLAAEPAEPFDVAVTSLGVNDVTGGVPPARWLAQQAELVRLLATRFQVGHAILSAVPPMERF PALPQPLAWYLGRRAKRLNAALAGWAGGQPHCTFLRVDLPLERHLMAADGFHPGTAACAVWAAQVAAAVRQRPGG >Mature_234_residues GYPFATAALGPLLFAQGRYVRRVTPRLPEAAGPRDGVAGDGPPLRVLVVGDSAAAGVGVATQHDALAGQLANALAATHRV HWKLLARTGLTTRELVDWLAAEPAEPFDVAVTSLGVNDVTGGVPPARWLAQQAELVRLLATRFQVGHAILSAVPPMERFP ALPQPLAWYLGRRAKRLNAALAGWAGGQPHCTFLRVDLPLERHLMAADGFHPGTAACAVWAAQVAAAVRQRPGG
Specific function: Unknown
COG id: COG2755
COG function: function code E; Lysophospholipase L1 and related esterases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24719; Mature: 24588
Theoretical pI: Translated: 10.51; Mature: 10.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYPFATAALGPLLFAQGRYVRRVTPRLPEAAGPRDGVAGDGPPLRVLVVGDSAAAGVGV CCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC ATQHDALAGQLANALAATHRVHWKLLARTGLTTRELVDWLAAEPAEPFDVAVTSLGVNDV CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCCHHC TGGVPPARWLAQQAELVRLLATRFQVGHAILSAVPPMERFPALPQPLAWYLGRRAKRLNA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHH ALAGWAGGQPHCTFLRVDLPLERHLMAADGFHPGTAACAVWAAQVAAAVRQRPGG HHHCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GYPFATAALGPLLFAQGRYVRRVTPRLPEAAGPRDGVAGDGPPLRVLVVGDSAAAGVGV CCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC ATQHDALAGQLANALAATHRVHWKLLARTGLTTRELVDWLAAEPAEPFDVAVTSLGVNDV CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCCHHC TGGVPPARWLAQQAELVRLLATRFQVGHAILSAVPPMERFPALPQPLAWYLGRRAKRLNA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHH ALAGWAGGQPHCTFLRVDLPLERHLMAADGFHPGTAACAVWAAQVAAAVRQRPGG HHHCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA