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The map label for this gene is ydgJ [H]

Identifier: 116688172

GI number: 116688172

Start: 162515

End: 163567

Strand: Reverse

Name: ydgJ [H]

Synonym: Bcen2424_0148

Alternate gene names: 116688172

Gene position: 163567-162515 (Counterclockwise)

Preceding gene: 116688173

Following gene: 116688171

Centisome position: 4.69

GC content: 71.23

Gene sequence:

>1053_bases
ATGTCGTCATTGCTCAGGATTGGTTTGATGGGTTTCGGTTTCGCCGGCGCGACGTTCCACGCGCCCGTGATCGCCACGAG
CGGCCGCACCGAAGTCGCCGCGATCGCGACGGGTCAGCCCGATCGCGCGCAGGCCGCGTATCCGGGCGCGCGCATCGTCC
CCGATCTCGACACGCTGCTCGGCCTCGATGACATCGAATGCGTGGTGATCGCCACGCCGAACGACACCCACTTCACGCTC
GCGCGTCAGGTGCTCGAAGCCGGCCGCCACGTGGTCGTCGACAAGCCGGTCACGCTCACCGCCGACGAGGCGCTCGCCCT
CGCGCGGCTCGCGAACGCGCGCAGCCGGCTGTTCGCGCCGTTCCACAACCGCCGCTGGGACGGCGATTTCCTCACCGTGC
GCCGGATCGTCGAATCGGGCGAGCTCGGCCGCCTCACCTACTTCGCGTCGCACTTCGACCGCTTCCGGCCGACGCCGCGC
ACGCGCTGGCGCGAGGAGCCGGCCCGCGGCGGCGGCCTGCTGCTCGACCTCGGCCCGCACCTGATCGACCAGGCGCTGGC
GCTGTTCGGCACGCCGGAAACGGTGAGCGCCACCGTCAAGACGCGCCGCGACAACGGCACGGCACCCGATTTCGTGCACT
TGCTGCTCGGCTATCCGGACAAGGACGTCGCGCTGCATGCGAGCGCGCTGTCGGCGATCGAGCCCGCGCGCTTCACGCTG
CACGGCACGCGCGGCAGCTACCAGAAGTTCGGGCTCGACACGCAGGAAGACCAGCTCAAGGCCGGCCTCACCGCGGACGA
CGTCGAATTCGGCGGCGGCAACCCGCCCGGCCTGCTGCGCGTGCTCGACGGCGAGGTCGAGCTCGAGCGGCCGGTGCCGA
CGCTCGACGGCCAGTACGCGGAGTTCTACCGCGCGCTCGCCGCGTCGATCCGCGACGGCGCGCCGTTTCCCGTCACCGCG
CAGGACGCGGTTGACGTGATGACGATCATCGAGCTCGCCGCGCAGAGCGAACACGACGGCCGCCGGGTGCCGTTCGTGCG
CCGCACGGTCTGA

Upstream 100 bases:

>100_bases
ACGCGTCTGTGCAAGCAGCGACGCCATGCCAAAATAGCCGGTCGTCCTCGCGCCGCTCCGGCGCGCCATCCTTTAGTTTC
CTTCGCAGCCAGGAATTGCC

Downstream 100 bases:

>100_bases
CGGCCGCCGGCCGGGTCCGTACCGACCCGGCCACCCTCCGCGCCACGCCGCCAGGCATCGGCACCGGCGGCGCTTGTGTC
TACCGCCACGCCGCCCCGCG

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MSSLLRIGLMGFGFAGATFHAPVIATSGRTEVAAIATGQPDRAQAAYPGARIVPDLDTLLGLDDIECVVIATPNDTHFTL
ARQVLEAGRHVVVDKPVTLTADEALALARLANARSRLFAPFHNRRWDGDFLTVRRIVESGELGRLTYFASHFDRFRPTPR
TRWREEPARGGGLLLDLGPHLIDQALALFGTPETVSATVKTRRDNGTAPDFVHLLLGYPDKDVALHASALSAIEPARFTL
HGTRGSYQKFGLDTQEDQLKAGLTADDVEFGGGNPPGLLRVLDGEVELERPVPTLDGQYAEFYRALAASIRDGAPFPVTA
QDAVDVMTIIELAAQSEHDGRRVPFVRRTV

Sequences:

>Translated_350_residues
MSSLLRIGLMGFGFAGATFHAPVIATSGRTEVAAIATGQPDRAQAAYPGARIVPDLDTLLGLDDIECVVIATPNDTHFTL
ARQVLEAGRHVVVDKPVTLTADEALALARLANARSRLFAPFHNRRWDGDFLTVRRIVESGELGRLTYFASHFDRFRPTPR
TRWREEPARGGGLLLDLGPHLIDQALALFGTPETVSATVKTRRDNGTAPDFVHLLLGYPDKDVALHASALSAIEPARFTL
HGTRGSYQKFGLDTQEDQLKAGLTADDVEFGGGNPPGLLRVLDGEVELERPVPTLDGQYAEFYRALAASIRDGAPFPVTA
QDAVDVMTIIELAAQSEHDGRRVPFVRRTV
>Mature_349_residues
SSLLRIGLMGFGFAGATFHAPVIATSGRTEVAAIATGQPDRAQAAYPGARIVPDLDTLLGLDDIECVVIATPNDTHFTLA
RQVLEAGRHVVVDKPVTLTADEALALARLANARSRLFAPFHNRRWDGDFLTVRRIVESGELGRLTYFASHFDRFRPTPRT
RWREEPARGGGLLLDLGPHLIDQALALFGTPETVSATVKTRRDNGTAPDFVHLLLGYPDKDVALHASALSAIEPARFTLH
GTRGSYQKFGLDTQEDQLKAGLTADDVEFGGGNPPGLLRVLDGEVELERPVPTLDGQYAEFYRALAASIRDGAPFPVTAQ
DAVDVMTIIELAAQSEHDGRRVPFVRRTV

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=336, Percent_Identity=43.1547619047619, Blast_Score=284, Evalue=6e-78,
Organism=Escherichia coli, GI1789848, Length=333, Percent_Identity=32.1321321321321, Blast_Score=178, Evalue=6e-46,
Organism=Escherichia coli, GI1787574, Length=212, Percent_Identity=26.8867924528302, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38007; Mature: 37876

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLRIGLMGFGFAGATFHAPVIATSGRTEVAAIATGQPDRAQAAYPGARIVPDLDTLL
CCCHHHHHHHHCCCCCCEEECCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
GLDDIECVVIATPNDTHFTLARQVLEAGRHVVVDKPVTLTADEALALARLANARSRLFAP
CCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHCCC
FHNRRWDGDFLTVRRIVESGELGRLTYFASHFDRFRPTPRTRWREEPARGGGLLLDLGPH
HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHH
LIDQALALFGTPETVSATVKTRRDNGTAPDFVHLLLGYPDKDVALHASALSAIEPARFTL
HHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCHHEEEHHHHHHCCCCEEEE
HGTRGSYQKFGLDTQEDQLKAGLTADDVEFGGGNPPGLLRVLDGEVELERPVPTLDGQYA
ECCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEECCCCCCCCCHHH
EFYRALAASIRDGAPFPVTAQDAVDVMTIIELAAQSEHDGRRVPFVRRTV
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSLLRIGLMGFGFAGATFHAPVIATSGRTEVAAIATGQPDRAQAAYPGARIVPDLDTLL
CCHHHHHHHHCCCCCCEEECCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
GLDDIECVVIATPNDTHFTLARQVLEAGRHVVVDKPVTLTADEALALARLANARSRLFAP
CCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHCCC
FHNRRWDGDFLTVRRIVESGELGRLTYFASHFDRFRPTPRTRWREEPARGGGLLLDLGPH
HHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHH
LIDQALALFGTPETVSATVKTRRDNGTAPDFVHLLLGYPDKDVALHASALSAIEPARFTL
HHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCHHEEEHHHHHHCCCCEEEE
HGTRGSYQKFGLDTQEDQLKAGLTADDVEFGGGNPPGLLRVLDGEVELERPVPTLDGQYA
ECCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEECCCEEECCCCCCCCCHHH
EFYRALAASIRDGAPFPVTAQDAVDVMTIIELAAQSEHDGRRVPFVRRTV
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]