| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116688139
Identifier: 116688139
GI number: 116688139
Start: 123306
End: 123716
Strand: Reverse
Name: 116688139
Synonym: Bcen2424_0115
Alternate gene names: NA
Gene position: 123716-123306 (Counterclockwise)
Preceding gene: 116688140
Following gene: 116688134
Centisome position: 3.55
GC content: 51.34
Gene sequence:
>411_bases ATGCCTAAATTTATTGTTAGCCTATACCTGATCACATCTAGTCCGGTATTCGCATGCATCGCCAGCGAGAACTTCGACAT CTACTTTTCGAGAGATAGCTCGCACATCTCGAACGCCGAAATCGTCCGCATTGCAAAATGGACAATCGACCAGAAACTCA ATTACGCGAATCACCTGACCAAGGAAACAACGCTGATCAGCGGCCATGCCGAGGAAAGTGAACCGGAAGCACTGGCCCTT GCGCAATCAAGATTGCAAACCGCGTATGCGCTGTTGGAGCAACTCGGTTTTTTACGCGGCACCATCAAGAAGAGCGTCCG CGTCTATTCGCATGGCGACGTCGACAATGGGCGGCGTGTGGAAATTTCCTTCCTGCCCGATTGCCCTAACAAGTGCTGCG ACGGCAAGTAA
Upstream 100 bases:
>100_bases TCTCGGGGCAGGACATTCCGTTTACCGAGACACGGCCGTGGTTGAGCAACGTCGACCAGCAATCAACAATGCCGACAGCA TTGCAGGACACGTAATTTAC
Downstream 100 bases:
>100_bases CGTCATACTGCCGCCGATCGGGGCGATGCGGTATCGACGTACACATGCGGCGAACCTGCTGCACCACTGCCTGCAACATC CCTATGCCCCTGTCGGGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MPKFIVSLYLITSSPVFACIASENFDIYFSRDSSHISNAEIVRIAKWTIDQKLNYANHLTKETTLISGHAEESEPEALAL AQSRLQTAYALLEQLGFLRGTIKKSVRVYSHGDVDNGRRVEISFLPDCPNKCCDGK
Sequences:
>Translated_136_residues MPKFIVSLYLITSSPVFACIASENFDIYFSRDSSHISNAEIVRIAKWTIDQKLNYANHLTKETTLISGHAEESEPEALAL AQSRLQTAYALLEQLGFLRGTIKKSVRVYSHGDVDNGRRVEISFLPDCPNKCCDGK >Mature_135_residues PKFIVSLYLITSSPVFACIASENFDIYFSRDSSHISNAEIVRIAKWTIDQKLNYANHLTKETTLISGHAEESEPEALALA QSRLQTAYALLEQLGFLRGTIKKSVRVYSHGDVDNGRRVEISFLPDCPNKCCDGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15225; Mature: 15094
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKFIVSLYLITSSPVFACIASENFDIYFSRDSSHISNAEIVRIAKWTIDQKLNYANHLT CCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECHHHHCCHHHHCC KETTLISGHAEESEPEALALAQSRLQTAYALLEQLGFLRGTIKKSVRVYSHGDVDNGRRV CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEE EISFLPDCPNKCCDGK EEEECCCCCCCCCCCC >Mature Secondary Structure PKFIVSLYLITSSPVFACIASENFDIYFSRDSSHISNAEIVRIAKWTIDQKLNYANHLT CCCEEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEECHHHHCCHHHHCC KETTLISGHAEESEPEALALAQSRLQTAYALLEQLGFLRGTIKKSVRVYSHGDVDNGRRV CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEE EISFLPDCPNKCCDGK EEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA