| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is livH [C]
Identifier: 116688114
GI number: 116688114
Start: 92176
End: 93360
Strand: Direct
Name: livH [C]
Synonym: Bcen2424_0090
Alternate gene names: 116688114
Gene position: 92176-93360 (Clockwise)
Preceding gene: 116688113
Following gene: 116688115
Centisome position: 2.65
GC content: 67.09
Gene sequence:
>1185_bases ATGGCCGCCGCCGTGCCGCCTGGAACCACCGGGGCCCGCCGCATGACGCGACGTGCCGATCGCGTCGCGCGCGCCCCGGC CGTTTCCGCCTTTCGTTTCTCCGCAGCCTTCTCTCGATACACGAAACGTATGGATCTCTCGATTGCGGCGATCCTCGCGC AAGACGGCATCACGACCGGCGCCATTTATGCATTGTTGTCGCTGGCGCTCGTGCTGGTGTTTTCCGTCACGCGGGTGATC TTCATTCCCCAGGGCGAGTTCGTCGCCTACGGTGCGCTGACGCTCGCCGCGTTGCAGGCGCAGAAATTCCCCGCCACCTG CTGGCTGCTGTTCGTGATGGGCATCGCGTGCTTCCTGCTCGAAGTCGGTGGCCTGATCCGGCATCGCGAACGCCGCCATC AGCTCGGCCGCACGCTCGCGACGCTCGGCAGCCGCTACATCCTGCTGCCGCTCGCGGTGTTCGCTATCACGCGCAGCTTC GCCGCGCAGCCGATGCCGATGCTCGCGCAGATCGCGCTGACGCTCGCGATCGTCGTGCCGATGGGGCCGTTCGTCTACCG GCTCGTGTACCAGCCGATCGCCGAAGGCACGACGCTGCTGCTGCTGATCGTGTCGGTGGCCGTCCATTTCGCGATGGTCG GCCTCGGCCTCGTGATGTTCGGTGCGGAAGGCTCGCGCACCAACGGGTTCTCGGACGCGTCGCTCGCGATCGGCAGCATG ACGGTGTCGGTGCAGAGCGTCCTGGTCGTCGTCACGGCGCTCGTGCTGATCGGTGCGCTCTACGTGTACTTCGGCCGCAC GATCGCCGGCAAGGCGCTGCGCGCGACCTCGGTGAACCGGCTCGGCGCGCGGCTCGTCGGCATCGGCACGACCGAAGCCG GGCGGCTCGCGTTCACGTTCGCGGCGGGGCTCGGCGTGCTGTCGGGGATCCTCGTCGGCCCGCTGACGACGATCTACTAC GACTCGGGCTTCCTGATCGGCCTGAAGGGCTTCGTCGGCGCGATCATCGGCGGGCTCGTCAGCTATCCGCTGGCGGCCGC TGGCTCGCTGCTCGTCGGCGTGCTCGAATCGTATTCGTCATTCTGGGCGAGTGCCTACAAGGAGGTGATCGTGTTCACGC TGATCATTCCGGTGCTGCTGTGGCGGAGCTTCGTGACGCCGCATGCGGAAGAGGAAGAGGAGTGA
Upstream 100 bases:
>100_bases CGACGGCAAGTGGAAGCTGCAGGCCGAGTAAGCATCACGTGAAACCGGCATGCACGGCGCGAACGGCGCCGCGTGTGCCG TCGGCAGGGTGGCGCGCCTC
Downstream 100 bases:
>100_bases CGCGATGAAGACGATGGTACGCAACAAGACCTTCTGGCTGTTTCTCGTGGTGCTGTTCGCGCTGCCGGTGCTGCCCGGCG CGCTCCAGGTACCGGAGTAC
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: ABC Transporter Permease Protein; Branched-Chain Amino Acid ABC Transporter Permease Protein; Branched-Chain Amino Acid ABC Transporter Permease; Branched-Chain Amino Acid Transport System Permease Protein; ABC Transporter Permease; Inner-Membrane TranslocatorABC Transporter ; Branched Chain Amino Acid ABC Transporter Permease; ABC-Transporter Permease Component; Branched-Chain Amino Acid ABC Transporter Membrane Protein; Amino Acid Or Sugar ABC Transport System Permease Protein; ABC Transporter ATPase Component; Branched-Chain Amino Acid Transport System Permease; Amino Acid ABC Transporter Permease; ABC Transporter Membrane Spanning Protein
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MAAAVPPGTTGARRMTRRADRVARAPAVSAFRFSAAFSRYTKRMDLSIAAILAQDGITTGAIYALLSLALVLVFSVTRVI FIPQGEFVAYGALTLAALQAQKFPATCWLLFVMGIACFLLEVGGLIRHRERRHQLGRTLATLGSRYILLPLAVFAITRSF AAQPMPMLAQIALTLAIVVPMGPFVYRLVYQPIAEGTTLLLLIVSVAVHFAMVGLGLVMFGAEGSRTNGFSDASLAIGSM TVSVQSVLVVVTALVLIGALYVYFGRTIAGKALRATSVNRLGARLVGIGTTEAGRLAFTFAAGLGVLSGILVGPLTTIYY DSGFLIGLKGFVGAIIGGLVSYPLAAAGSLLVGVLESYSSFWASAYKEVIVFTLIIPVLLWRSFVTPHAEEEEE
Sequences:
>Translated_394_residues MAAAVPPGTTGARRMTRRADRVARAPAVSAFRFSAAFSRYTKRMDLSIAAILAQDGITTGAIYALLSLALVLVFSVTRVI FIPQGEFVAYGALTLAALQAQKFPATCWLLFVMGIACFLLEVGGLIRHRERRHQLGRTLATLGSRYILLPLAVFAITRSF AAQPMPMLAQIALTLAIVVPMGPFVYRLVYQPIAEGTTLLLLIVSVAVHFAMVGLGLVMFGAEGSRTNGFSDASLAIGSM TVSVQSVLVVVTALVLIGALYVYFGRTIAGKALRATSVNRLGARLVGIGTTEAGRLAFTFAAGLGVLSGILVGPLTTIYY DSGFLIGLKGFVGAIIGGLVSYPLAAAGSLLVGVLESYSSFWASAYKEVIVFTLIIPVLLWRSFVTPHAEEEEE >Mature_393_residues AAAVPPGTTGARRMTRRADRVARAPAVSAFRFSAAFSRYTKRMDLSIAAILAQDGITTGAIYALLSLALVLVFSVTRVIF IPQGEFVAYGALTLAALQAQKFPATCWLLFVMGIACFLLEVGGLIRHRERRHQLGRTLATLGSRYILLPLAVFAITRSFA AQPMPMLAQIALTLAIVVPMGPFVYRLVYQPIAEGTTLLLLIVSVAVHFAMVGLGLVMFGAEGSRTNGFSDASLAIGSMT VSVQSVLVVVTALVLIGALYVYFGRTIAGKALRATSVNRLGARLVGIGTTEAGRLAFTFAAGLGVLSGILVGPLTTIYYD SGFLIGLKGFVGAIIGGLVSYPLAAAGSLLVGVLESYSSFWASAYKEVIVFTLIIPVLLWRSFVTPHAEEEEE
Specific function: Part Of The Binding-Protein-Dependent Transport System For Branched-Chain Amino Acids. Probably Responsible For The Translocation Of The Substrates Across The Membrane. [C]
COG id: COG0559
COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41790; Mature: 41659
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAAVPPGTTGARRMTRRADRVARAPAVSAFRFSAAFSRYTKRMDLSIAAILAQDGITTG CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH AIYALLSLALVLVFSVTRVIFIPQGEFVAYGALTLAALQAQKFPATCWLLFVMGIACFLL HHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH EVGGLIRHRERRHQLGRTLATLGSRYILLPLAVFAITRSFAAQPMPMLAQIALTLAIVVP HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC MGPFVYRLVYQPIAEGTTLLLLIVSVAVHFAMVGLGLVMFGAEGSRTNGFSDASLAIGSM CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH TVSVQSVLVVVTALVLIGALYVYFGRTIAGKALRATSVNRLGARLVGIGTTEAGRLAFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHH AAGLGVLSGILVGPLTTIYYDSGFLIGLKGFVGAIIGGLVSYPLAAAGSLLVGVLESYSS HHHHHHHHHHHHHHHHHHEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FWASAYKEVIVFTLIIPVLLWRSFVTPHAEEEEE HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AAAVPPGTTGARRMTRRADRVARAPAVSAFRFSAAFSRYTKRMDLSIAAILAQDGITTG CCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH AIYALLSLALVLVFSVTRVIFIPQGEFVAYGALTLAALQAQKFPATCWLLFVMGIACFLL HHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH EVGGLIRHRERRHQLGRTLATLGSRYILLPLAVFAITRSFAAQPMPMLAQIALTLAIVVP HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC MGPFVYRLVYQPIAEGTTLLLLIVSVAVHFAMVGLGLVMFGAEGSRTNGFSDASLAIGSM CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH TVSVQSVLVVVTALVLIGALYVYFGRTIAGKALRATSVNRLGARLVGIGTTEAGRLAFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHH AAGLGVLSGILVGPLTTIYYDSGFLIGLKGFVGAIIGGLVSYPLAAAGSLLVGVLESYSS HHHHHHHHHHHHHHHHHHEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FWASAYKEVIVFTLIIPVLLWRSFVTPHAEEEEE HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA