| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688113
Identifier: 116688113
GI number: 116688113
Start: 90949
End: 92106
Strand: Direct
Name: 116688113
Synonym: Bcen2424_0089
Alternate gene names: NA
Gene position: 90949-92106 (Clockwise)
Preceding gene: 116688112
Following gene: 116688114
Centisome position: 2.61
GC content: 66.93
Gene sequence:
>1158_bases ATGAAGATGAATCGATGGATGGAGGCCCTGCTTGCCGCGGGTCTCGTTTGTGCGGCGGCCACGGCGTCGGCGCAGGTGAA GATCGGCGTGACGCTGTCGGCTACCGGCCCGGCCGCGTCGCTCGGGATTCCGGAAAAGAACACGATCGCGCTGCTGCCGA AGGAAATCGCGGGCAAGAGCGTGCAGTACATCGTGCTGGACGACGCGTCCGACACGAGCCGCGCGGTGCAGAACGTGCGC AAGCTGATCGACGAGGACCACGTCGACGCGATCATCGGCTCGTCCGTCACGCCGAATTCGCTCGCGATGCTCGATCCCGT GTCGCAGGGCAAGACGCCGGCGATCTCGCTCGCGGCGAGCGCGCAGATCATCGCGCCGATGGACGCGAAGCGCGCATGGA TGTTCAAGGTGCCGCAGAACGACCAGCTGATGGCCGACGCGATCGCCGGCTACATGGCCAAGCACGGCGTGAAGACGGTC GGCTTCATCGGCTTCGCCGATGCGTACGGCGACAGCTGGTACAAGACGTTCGACGCGGCGGCCGCGAAGAACGGGCTGAA GCTCGTGTCGAACGAGCGCTACAACCGGACCGACGCGTCGGTGATGGGGCAGGTGCTGAAGCTGCTGGGCGCGAACCCGG ATGCGGTGCTGATCGCCGGCTCCGGCACGCCGGCGGCGCTGCCGGCCAAGACGCTGAAGGAGCGCGGCTACAAGGGCAAG GTGTACCAGACGCACGGCGTCGCGAACAACGATTTCCTGCGCGTGTGCGGCAAGGATTGCGAAGGCGAGATCCTGCCGGC CGGCCCCGTGCTCGTGACCGACCAGCTGCCCGACTCGAATCCGGTGAAGAAGCCGGCGCTCGGCTACAAGGCCGCGTACG AGAAGGCCTACGGCGCGGGTTCGCTGTCGACGTTCGGCGGCCATGCGTGGGATGCGGGCCTGCTGCTGCAGCGGGCGATC CCGGAAGCGCTGAAGAAGGGCCAGCCGGGCACCGAGGCGTTCCGCGAAGCGCTGCGCGCGTCGCTCGAAAGCGTGAAGGA TCTGCCGGTCTCGCATGGCGTGATCAACATGACGGCGACCGATCACAACGGCTTCGACACGCGTGCGCGCGTGATGGTGC AGATCGTCGACGGCAAGTGGAAGCTGCAGGCCGAGTAA
Upstream 100 bases:
>100_bases GGCGCGGATGAGCGTGATAATTAATATATTAACTTGTTTGGGAACGGGGAGCCGCCCGAGCGACCGTGGTTTTTTCGAGC AGCGTTTGGAGACAACGTAA
Downstream 100 bases:
>100_bases GCATCACGTGAAACCGGCATGCACGGCGCGAACGGCGCCGCGTGTGCCGTCGGCAGGGTGGCGCGCCTCATGGCCGCCGC CGTGCCGCCTGGAACCACCG
Product: extracellular ligand-binding receptor
Products: NA
Alternate protein names: Branched-Chain Amino Acid ABC Transporter; Branched-Chain Amino Acid Transporter; Amino Acid ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MKMNRWMEALLAAGLVCAAATASAQVKIGVTLSATGPAASLGIPEKNTIALLPKEIAGKSVQYIVLDDASDTSRAVQNVR KLIDEDHVDAIIGSSVTPNSLAMLDPVSQGKTPAISLAASAQIIAPMDAKRAWMFKVPQNDQLMADAIAGYMAKHGVKTV GFIGFADAYGDSWYKTFDAAAAKNGLKLVSNERYNRTDASVMGQVLKLLGANPDAVLIAGSGTPAALPAKTLKERGYKGK VYQTHGVANNDFLRVCGKDCEGEILPAGPVLVTDQLPDSNPVKKPALGYKAAYEKAYGAGSLSTFGGHAWDAGLLLQRAI PEALKKGQPGTEAFREALRASLESVKDLPVSHGVINMTATDHNGFDTRARVMVQIVDGKWKLQAE
Sequences:
>Translated_385_residues MKMNRWMEALLAAGLVCAAATASAQVKIGVTLSATGPAASLGIPEKNTIALLPKEIAGKSVQYIVLDDASDTSRAVQNVR KLIDEDHVDAIIGSSVTPNSLAMLDPVSQGKTPAISLAASAQIIAPMDAKRAWMFKVPQNDQLMADAIAGYMAKHGVKTV GFIGFADAYGDSWYKTFDAAAAKNGLKLVSNERYNRTDASVMGQVLKLLGANPDAVLIAGSGTPAALPAKTLKERGYKGK VYQTHGVANNDFLRVCGKDCEGEILPAGPVLVTDQLPDSNPVKKPALGYKAAYEKAYGAGSLSTFGGHAWDAGLLLQRAI PEALKKGQPGTEAFREALRASLESVKDLPVSHGVINMTATDHNGFDTRARVMVQIVDGKWKLQAE >Mature_385_residues MKMNRWMEALLAAGLVCAAATASAQVKIGVTLSATGPAASLGIPEKNTIALLPKEIAGKSVQYIVLDDASDTSRAVQNVR KLIDEDHVDAIIGSSVTPNSLAMLDPVSQGKTPAISLAASAQIIAPMDAKRAWMFKVPQNDQLMADAIAGYMAKHGVKTV GFIGFADAYGDSWYKTFDAAAAKNGLKLVSNERYNRTDASVMGQVLKLLGANPDAVLIAGSGTPAALPAKTLKERGYKGK VYQTHGVANNDFLRVCGKDCEGEILPAGPVLVTDQLPDSNPVKKPALGYKAAYEKAYGAGSLSTFGGHAWDAGLLLQRAI PEALKKGQPGTEAFREALRASLESVKDLPVSHGVINMTATDHNGFDTRARVMVQIVDGKWKLQAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40659; Mature: 40659
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMNRWMEALLAAGLVCAAATASAQVKIGVTLSATGPAASLGIPEKNTIALLPKEIAGKS CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCEEEECCHHHCCCC VQYIVLDDASDTSRAVQNVRKLIDEDHVDAIIGSSVTPNSLAMLDPVSQGKTPAISLAAS EEEEEEECCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECC AQIIAPMDAKRAWMFKVPQNDQLMADAIAGYMAKHGVKTVGFIGFADAYGDSWYKTFDAA CEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHCCHHHHHHHHH AAKNGLKLVSNERYNRTDASVMGQVLKLLGANPDAVLIAGSGTPAALPAKTLKERGYKGK HHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCC VYQTHGVANNDFLRVCGKDCEGEILPAGPVLVTDQLPDSNPVKKPALGYKAAYEKAYGAG EEEECCCCCCCHHEECCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCC SLSTFGGHAWDAGLLLQRAIPEALKKGQPGTEAFREALRASLESVKDLPVSHGVINMTAT CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC DHNGFDTRARVMVQIVDGKWKLQAE CCCCCCCCEEEEEEEECCEEEEECC >Mature Secondary Structure MKMNRWMEALLAAGLVCAAATASAQVKIGVTLSATGPAASLGIPEKNTIALLPKEIAGKS CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCEEEECCHHHCCCC VQYIVLDDASDTSRAVQNVRKLIDEDHVDAIIGSSVTPNSLAMLDPVSQGKTPAISLAAS EEEEEEECCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECC AQIIAPMDAKRAWMFKVPQNDQLMADAIAGYMAKHGVKTVGFIGFADAYGDSWYKTFDAA CEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHCCHHHHHHHHH AAKNGLKLVSNERYNRTDASVMGQVLKLLGANPDAVLIAGSGTPAALPAKTLKERGYKGK HHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCC VYQTHGVANNDFLRVCGKDCEGEILPAGPVLVTDQLPDSNPVKKPALGYKAAYEKAYGAG EEEECCCCCCCHHEECCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCC SLSTFGGHAWDAGLLLQRAIPEALKKGQPGTEAFREALRASLESVKDLPVSHGVINMTAT CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC DHNGFDTRARVMVQIVDGKWKLQAE CCCCCCCCEEEEEEEECCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA