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The map label for this gene is 116626868

Identifier: 116626868

GI number: 116626868

Start: 9838814

End: 9839533

Strand: Direct

Name: 116626868

Synonym: Acid_7843

Alternate gene names: NA

Gene position: 9838814-9839533 (Clockwise)

Preceding gene: 116626866

Following gene: 116626869

Centisome position: 98.73

GC content: 62.78

Gene sequence:

>720_bases
ATGGGTCTCGACGAATACGCAAAGAAACGGCGCTTCGAGAACACGCCCGAGCCACCTCCGTCTTCTAAGAAGAGCAAGCG
CGCGACCCAGCCCTACTTTTGTGTGCAACGTCACGATGCGACGCGGCTGCACTACGACTTTCGCCTGGAAATCGGCGGCG
TACTGAAAAGCTGGGCGGTTCCCAAGGGTCCGTCGCTGGACCCGACCGTAAAACACCTGGCGGCGTTCGTGGAGGATCAC
CCGCTCGAGTACGGCGGCTTCGAAGGCAACATTCCCGCGGGGAATTACGGCGCGGGATCGGTGATGTTGTGGGATCGCGG
CACCTGGGAGCTGTTAGGGGACGTGGACGCGGAGGCACAGCTGGCGCGCGGCGATTTGAAGTTCCGCCTGCACGGCGGGA
AGCTGAAGGGCGATTTCGCGATCGTGCTCATGAAAGGACGCGGCAAGGGAAACGAGTGGCTCCTGATCAAAAAGCGCGAC
GAGTTCGCGGTCGAAGGGTGGGACGTGGAGGCCCACGCGCATAGCGTGCTTTCCGGCCGCACCCAGCAGGAGATCGCGAG
CAATCTGCCTGCGCGGAAGACCAAGCGCAAAACCGCGGGCGCAGCGGACCGGGTGTGGGAGAGCGATCGTCCGGCAAAGC
GCGCGGGGAACACGGCGGCGAGCACGGCTGCCAAAGCTGCGCCGGCAAAAAAAAAACTGAAATCGAGCTCGGGACAATAA

Upstream 100 bases:

>100_bases
TCCAGACGCTTGCTGCCATATGTGTCGCTCGAGACCCCCTGCGGTTTTCAAGATACTACAAAGCCTTGTAGGATGTAAAT
GAAGGGTGAGAAAGGGAGTT

Downstream 100 bases:

>100_bases
AGGGCGCGATGCCTGCGGAAATGCCGGCGTCGATCGAGCCGATGAAGGCGACGATTGCCGAGCGCGTGCCGCGTGGGGAC
GAGTGGCTGTTCGAGATTAA

Product: ATP dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MGLDEYAKKRRFENTPEPPPSSKKSKRATQPYFCVQRHDATRLHYDFRLEIGGVLKSWAVPKGPSLDPTVKHLAAFVEDH
PLEYGGFEGNIPAGNYGAGSVMLWDRGTWELLGDVDAEAQLARGDLKFRLHGGKLKGDFAIVLMKGRGKGNEWLLIKKRD
EFAVEGWDVEAHAHSVLSGRTQQEIASNLPARKTKRKTAGAADRVWESDRPAKRAGNTAASTAAKAAPAKKKLKSSSGQ

Sequences:

>Translated_239_residues
MGLDEYAKKRRFENTPEPPPSSKKSKRATQPYFCVQRHDATRLHYDFRLEIGGVLKSWAVPKGPSLDPTVKHLAAFVEDH
PLEYGGFEGNIPAGNYGAGSVMLWDRGTWELLGDVDAEAQLARGDLKFRLHGGKLKGDFAIVLMKGRGKGNEWLLIKKRD
EFAVEGWDVEAHAHSVLSGRTQQEIASNLPARKTKRKTAGAADRVWESDRPAKRAGNTAASTAAKAAPAKKKLKSSSGQ
>Mature_238_residues
GLDEYAKKRRFENTPEPPPSSKKSKRATQPYFCVQRHDATRLHYDFRLEIGGVLKSWAVPKGPSLDPTVKHLAAFVEDHP
LEYGGFEGNIPAGNYGAGSVMLWDRGTWELLGDVDAEAQLARGDLKFRLHGGKLKGDFAIVLMKGRGKGNEWLLIKKRDE
FAVEGWDVEAHAHSVLSGRTQQEIASNLPARKTKRKTAGAADRVWESDRPAKRAGNTAASTAAKAAPAKKKLKSSSGQ

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 26260; Mature: 26129

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLDEYAKKRRFENTPEPPPSSKKSKRATQPYFCVQRHDATRLHYDFRLEIGGVLKSWAV
CCHHHHHHHHHCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEEEEEEEEECHHHHHCCC
PKGPSLDPTVKHLAAFVEDHPLEYGGFEGNIPAGNYGAGSVMLWDRGTWELLGDVDAEAQ
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCHHH
LARGDLKFRLHGGKLKGDFAIVLMKGRGKGNEWLLIKKRDEFAVEGWDVEAHAHSVLSGR
EECCCEEEEEECCEECCCEEEEEEECCCCCCEEEEEEECCCEEEECCCCHHHHHHHHCCC
TQQEIASNLPARKTKRKTAGAADRVWESDRPAKRAGNTAASTAAKAAPAKKKLKSSSGQ
CHHHHHHCCCCHHHHHHHCCCHHHHHCCCCCHHHCCCCHHHHHHHHCHHHHHHHCCCCC
>Mature Secondary Structure 
GLDEYAKKRRFENTPEPPPSSKKSKRATQPYFCVQRHDATRLHYDFRLEIGGVLKSWAV
CHHHHHHHHHCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEEEEEEEEECHHHHHCCC
PKGPSLDPTVKHLAAFVEDHPLEYGGFEGNIPAGNYGAGSVMLWDRGTWELLGDVDAEAQ
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCHHH
LARGDLKFRLHGGKLKGDFAIVLMKGRGKGNEWLLIKKRDEFAVEGWDVEAHAHSVLSGR
EECCCEEEEEECCEECCCEEEEEEECCCCCCEEEEEEECCCEEEECCCCHHHHHHHHCCC
TQQEIASNLPARKTKRKTAGAADRVWESDRPAKRAGNTAASTAAKAAPAKKKLKSSSGQ
CHHHHHHCCCCHHHHHHHCCCHHHHHCCCCCHHHCCCCHHHHHHHHCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]