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The map label for this gene is rlpA [C]

Identifier: 116626445

GI number: 116626445

Start: 9293498

End: 9294154

Strand: Direct

Name: rlpA [C]

Synonym: Acid_7407

Alternate gene names: 116626445

Gene position: 9293498-9294154 (Clockwise)

Preceding gene: 116626444

Following gene: 116626446

Centisome position: 93.26

GC content: 63.93

Gene sequence:

>657_bases
ATGAAAGTCTGGCTGGTGCTTCTGGGCGCGATCGTGATTGCCGGGTGCGGGCACAAGAAGCACGCGCGCGTCACGCCCCC
GCCTCCCGCCGTCGTCAAACCGGGACATACGGAGTCCGGGATTGCGAGCTGGTACGGGCATCCGTATCACGGGCGCGCGG
CGGCGAACGGCGAGATCTACGATATGGAGAAGATGACGGCGGCGCACCGCACGCTGCCGTTCAACACGTGGGTCCGGGTC
TACGACCTGGATAACAACAAGACGACCGAGGTGCGGATCATCGATCGTGGGCCGTTTATAGACGGGCGGATCATCGACCT
GTCGCACGCGGCGGCGCGCGAGATCGAGATGATCGGACCGGGGGTGGCGAAGGTCCGCATCGAGGTAATTCGCACTCCGG
CGAATGCGCCGCCGGCGCTGTTTGCGGTCCAGGTGGGCGCATTTCGGAATAAAGGAAGCGCAGAAGGCCTGCGGCAGCGC
ATGGCAGATCGCTACGGCTCGGCGCGGCTGCTGCAGCGCCCCGAAAATCCAGACGTATGGCGGGTTTTGGTGGGGGCGGA
GCCTAGCGAGGAGGCGGCCGGGCAACTCGCCGCCCGCATCCGGCAAGATTCTGTTGAGAAAAGTACCGGCTTCATCGTAC
GAATTGATTCGATGTAA

Upstream 100 bases:

>100_bases
GCGCCGGCGATCGAAAATGTGCGTCCGGTGCTGAAGAGAACAGATTAGGTGCACCGGCCGGCGTGCCTCTCGCACTGTGG
TAACTTCGGGGAATAGGCGC

Downstream 100 bases:

>100_bases
GTTGGGACCGGTTATGACTCACGGTCTTGTAGGCGGGTCCGCGCAGATTGCCTCGATTCGCCGGCTGATCGAGAAGGCGT
CGCGGAACCGCCTTCCTGTG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKVWLVLLGAIVIAGCGHKKHARVTPPPPAVVKPGHTESGIASWYGHPYHGRAAANGEIYDMEKMTAAHRTLPFNTWVRV
YDLDNNKTTEVRIIDRGPFIDGRIIDLSHAAAREIEMIGPGVAKVRIEVIRTPANAPPALFAVQVGAFRNKGSAEGLRQR
MADRYGSARLLQRPENPDVWRVLVGAEPSEEAAGQLAARIRQDSVEKSTGFIVRIDSM

Sequences:

>Translated_218_residues
MKVWLVLLGAIVIAGCGHKKHARVTPPPPAVVKPGHTESGIASWYGHPYHGRAAANGEIYDMEKMTAAHRTLPFNTWVRV
YDLDNNKTTEVRIIDRGPFIDGRIIDLSHAAAREIEMIGPGVAKVRIEVIRTPANAPPALFAVQVGAFRNKGSAEGLRQR
MADRYGSARLLQRPENPDVWRVLVGAEPSEEAAGQLAARIRQDSVEKSTGFIVRIDSM
>Mature_218_residues
MKVWLVLLGAIVIAGCGHKKHARVTPPPPAVVKPGHTESGIASWYGHPYHGRAAANGEIYDMEKMTAAHRTLPFNTWVRV
YDLDNNKTTEVRIIDRGPFIDGRIIDLSHAAAREIEMIGPGVAKVRIEVIRTPANAPPALFAVQVGAFRNKGSAEGLRQR
MADRYGSARLLQRPENPDVWRVLVGAEPSEEAAGQLAARIRQDSVEKSTGFIVRIDSM

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=95, Percent_Identity=37.8947368421053, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 23917; Mature: 23917

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVWLVLLGAIVIAGCGHKKHARVTPPPPAVVKPGHTESGIASWYGHPYHGRAAANGEIY
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEE
DMEKMTAAHRTLPFNTWVRVYDLDNNKTTEVRIIDRGPFIDGRIIDLSHAAAREIEMIGP
EHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEECCHHHHHHHHHCCC
GVAKVRIEVIRTPANAPPALFAVQVGAFRNKGSAEGLRQRMADRYGSARLLQRPENPDVW
CCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCEE
RVLVGAEPSEEAAGQLAARIRQDSVEKSTGFIVRIDSM
EEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC
>Mature Secondary Structure
MKVWLVLLGAIVIAGCGHKKHARVTPPPPAVVKPGHTESGIASWYGHPYHGRAAANGEIY
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEE
DMEKMTAAHRTLPFNTWVRVYDLDNNKTTEVRIIDRGPFIDGRIIDLSHAAAREIEMIGP
EHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEECCHHHHHHHHHCCC
GVAKVRIEVIRTPANAPPALFAVQVGAFRNKGSAEGLRQRMADRYGSARLLQRPENPDVW
CCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCEE
RVLVGAEPSEEAAGQLAARIRQDSVEKSTGFIVRIDSM
EEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]