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The map label for this gene is yhgF [C]

Identifier: 116626034

GI number: 116626034

Start: 8779680

End: 8781929

Strand: Direct

Name: yhgF [C]

Synonym: Acid_6992

Alternate gene names: 116626034

Gene position: 8779680-8781929 (Clockwise)

Preceding gene: 116626033

Following gene: 116626039

Centisome position: 88.1

GC content: 64.22

Gene sequence:

>2250_bases
ATGGCTGAACTGAAAGCTCTCCCCACCCCCGTTCTTCTTCACATTGCCAAGTTGCTGGCCGTTCCCCTCAAAGGAATGTC
CGCCGTTATCGCCCTCCTCGACGAAGGCGCGACCGTCCCCTTCATTGCCCGCTATCGCAAGGAAGTCACCGGCAATCTCG
ACGAAGTCCAGATCCGCGACATCCAGGAGAAACTCGAGTACTTCCGCGAGCTCGAGGACCGCCGTGAGACCGTCCTCGCC
TCCATCGAAGAGCAAGGCAAGCTCACCCCCGAGCTCAAAGCCAAGATCCTCGCCACCCTCGAGAAGACCGAGCTCGAAGA
TCTCTACCTCCCCTACAAACCCAAGCGCCGCACCAAAGCCTCCATCGCGCGCGACAAAGGACTCGAGCCCCTCGCGCTCT
TCCTCTGGGAGCAGTCCGACCCCACGCCTCTCTCCCAGGTCGCCGCCCGCTTCGGCATGCCCGCCGAAGAGGCCCTCGAA
GGCGCGCGCCACATCGTCGCCGAAATGGTCAGCGAGAAAGCCGAATTCCGCAAGGCCGTCCGCGCCATGATGATGACCGA
GGGCCGCGTCTCCAGCCGCGCCATCGAAGGCGTCCCCGATCCCGAGGGCAAGTACAAAATGTACGTGAGCTACGCGGAAC
CCGCGTCCAAGATCCCCTCGCACCGCATGCTCGCCATCCGCCGCGGCGCCAAAGAAGGCATCCTCACCTTCGAAATCGAG
CTCGAAAAACCGCAGCCGCTCGCGTGGCTCCGCTCCCACGTCGTCAAGGCTCCCGGCCCCTGGGTGCCGCACCTCGAAGA
GGCCATCGAGGATTCCTACGACCGCCTCCTCAAGCCCTCCATCCAGACCGAAGTCCGCCTCGAATTGAAGGACCGCTCCG
ACGAAGAGGCCATCAAAGTCTTCCGCGAGAACCTGGAGAACCTGCTGCTTTCCCCGCCCGCCGGCCGCATGACCGTGCTC
GCGCTCGACCCCGGCATCCGCACCGGCTGCAAGATCGCCGTCGTGGACGACACCGGCAAGTTCCTCGAAAACTCCGTCAT
CTACCCCTTCGAGCCGAAGAACGACACCGCCGGTTCTCGCAAGACGCTCGCCTCCCTGATCGCGCGCTACAACGTGCAGG
CGATCGCCATCGGCAACGGCACCGCCTCGCGCGAAAGTGCCGCCTTCGTGCAGGAGTTCCTGCGCAGTGCCAACCTCGCC
TCCATCTTCAGCGTCACGGTCAGCGAATCCGGCGCCAGCGTCTACTCCGCCTCCGAAATGGCGCGCCAGGAATTCCCCGA
ACTCGATCTCACCATTCGCGGCGCCATCTCCATCGCGCGCCGTCTCCAGGATCCCCTCGCCGAACTGGTGAAGGTGGACC
CCAAGTCCATCGGCGTCGGCCAGTACCAGCACGATGTCGATCAGCGCCGCCTCAAAGCGAGTCTGGAAGCCACCGTCGAA
AGCTGCGTGAACCGCGTCGGCGTCGATCTCAACACCGCCTCGTGGGCCCTACTGCGCTACGTCGCCGGCATCACCGAGCG
CACCGCCATCAAGATCACCGAATACCGCAACGATCACGGCCGCTTCCGCTCCCGCATGGACCTCATGGCCGTCCCCGGCT
TCGGCCCCAAGACTTTCGAGCAGGCTGCCGGCTTCCTGCGCATCCGCGGCGGCGATAACCCGCTCGATATCACCGCCGTC
CATCCCGAATCCTACCCGGTCGTGCAGAAGATCGCCCAGTCGCTCGGCACCACCATTGACGATCTCATCCGCAAGCCCGA
GCTCATCGAAAAGGTCAAGCTCGAAGGCTTCGCCACCGCGTCCGTCGGCATGTACACCCTCGGCGACATCCGCGAGGAAT
TGCGCAAGCCCGGTCGCGATCCCCGCGACCAGTTCGTCGCCCCCAAGTGGCGCGAGGACGTCCGCGAGATCGCCGACCTG
CAACCCGGCATGACGCTCGAAGGCGTCGTCACCAACGTTACCCGCTTTGGCGCCTTCATCGACGTCGGCGTCCACAACGA
TGGCCTCGTCCACGTCAGCCAGCTCGCCAACCGGTTCGTCAAGGATGCGTCAGAAGTCGTGAAGGCCGGCCAGATCGTCA
AGGTCCAGGTGATCAGCGCCGACCCGAAAACCAAGCGCATCGCCCTCTCCATGAAGGCCCTCGACGCCGCGCCGCCCGAG
CCCAAGCGCAAACACTTCCAGGCGCCTACGCCCCCGAAACCGACCATGGAAGAGAGCCTCGCCAAACTCCAAAATAAATT
CAAGCGCTAG

Upstream 100 bases:

>100_bases
ACAAAAAAACATTTCTCGCCAAGACGCCAAGACCGCCAAGAAAATCTTCCTTGCATTCTTCTGCTTTCCCTCGTGGGATC
ATAGAGGTTCCACTCGGACC

Downstream 100 bases:

>100_bases
CACCCGCGCCGCGACGACTTCGTGGGGCAGCCAATCTTGGCTGCAGCCGCCTTTCAGGCGGCTTCTCCCGCCCGGCACCC
GGCGCCAATCCTAGCTGCGC

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 749; Mature: 748

Protein sequence:

>749_residues
MAELKALPTPVLLHIAKLLAVPLKGMSAVIALLDEGATVPFIARYRKEVTGNLDEVQIRDIQEKLEYFRELEDRRETVLA
SIEEQGKLTPELKAKILATLEKTELEDLYLPYKPKRRTKASIARDKGLEPLALFLWEQSDPTPLSQVAARFGMPAEEALE
GARHIVAEMVSEKAEFRKAVRAMMMTEGRVSSRAIEGVPDPEGKYKMYVSYAEPASKIPSHRMLAIRRGAKEGILTFEIE
LEKPQPLAWLRSHVVKAPGPWVPHLEEAIEDSYDRLLKPSIQTEVRLELKDRSDEEAIKVFRENLENLLLSPPAGRMTVL
ALDPGIRTGCKIAVVDDTGKFLENSVIYPFEPKNDTAGSRKTLASLIARYNVQAIAIGNGTASRESAAFVQEFLRSANLA
SIFSVTVSESGASVYSASEMARQEFPELDLTIRGAISIARRLQDPLAELVKVDPKSIGVGQYQHDVDQRRLKASLEATVE
SCVNRVGVDLNTASWALLRYVAGITERTAIKITEYRNDHGRFRSRMDLMAVPGFGPKTFEQAAGFLRIRGGDNPLDITAV
HPESYPVVQKIAQSLGTTIDDLIRKPELIEKVKLEGFATASVGMYTLGDIREELRKPGRDPRDQFVAPKWREDVREIADL
QPGMTLEGVVTNVTRFGAFIDVGVHNDGLVHVSQLANRFVKDASEVVKAGQIVKVQVISADPKTKRIALSMKALDAAPPE
PKRKHFQAPTPPKPTMEESLAKLQNKFKR

Sequences:

>Translated_749_residues
MAELKALPTPVLLHIAKLLAVPLKGMSAVIALLDEGATVPFIARYRKEVTGNLDEVQIRDIQEKLEYFRELEDRRETVLA
SIEEQGKLTPELKAKILATLEKTELEDLYLPYKPKRRTKASIARDKGLEPLALFLWEQSDPTPLSQVAARFGMPAEEALE
GARHIVAEMVSEKAEFRKAVRAMMMTEGRVSSRAIEGVPDPEGKYKMYVSYAEPASKIPSHRMLAIRRGAKEGILTFEIE
LEKPQPLAWLRSHVVKAPGPWVPHLEEAIEDSYDRLLKPSIQTEVRLELKDRSDEEAIKVFRENLENLLLSPPAGRMTVL
ALDPGIRTGCKIAVVDDTGKFLENSVIYPFEPKNDTAGSRKTLASLIARYNVQAIAIGNGTASRESAAFVQEFLRSANLA
SIFSVTVSESGASVYSASEMARQEFPELDLTIRGAISIARRLQDPLAELVKVDPKSIGVGQYQHDVDQRRLKASLEATVE
SCVNRVGVDLNTASWALLRYVAGITERTAIKITEYRNDHGRFRSRMDLMAVPGFGPKTFEQAAGFLRIRGGDNPLDITAV
HPESYPVVQKIAQSLGTTIDDLIRKPELIEKVKLEGFATASVGMYTLGDIREELRKPGRDPRDQFVAPKWREDVREIADL
QPGMTLEGVVTNVTRFGAFIDVGVHNDGLVHVSQLANRFVKDASEVVKAGQIVKVQVISADPKTKRIALSMKALDAAPPE
PKRKHFQAPTPPKPTMEESLAKLQNKFKR
>Mature_748_residues
AELKALPTPVLLHIAKLLAVPLKGMSAVIALLDEGATVPFIARYRKEVTGNLDEVQIRDIQEKLEYFRELEDRRETVLAS
IEEQGKLTPELKAKILATLEKTELEDLYLPYKPKRRTKASIARDKGLEPLALFLWEQSDPTPLSQVAARFGMPAEEALEG
ARHIVAEMVSEKAEFRKAVRAMMMTEGRVSSRAIEGVPDPEGKYKMYVSYAEPASKIPSHRMLAIRRGAKEGILTFEIEL
EKPQPLAWLRSHVVKAPGPWVPHLEEAIEDSYDRLLKPSIQTEVRLELKDRSDEEAIKVFRENLENLLLSPPAGRMTVLA
LDPGIRTGCKIAVVDDTGKFLENSVIYPFEPKNDTAGSRKTLASLIARYNVQAIAIGNGTASRESAAFVQEFLRSANLAS
IFSVTVSESGASVYSASEMARQEFPELDLTIRGAISIARRLQDPLAELVKVDPKSIGVGQYQHDVDQRRLKASLEATVES
CVNRVGVDLNTASWALLRYVAGITERTAIKITEYRNDHGRFRSRMDLMAVPGFGPKTFEQAAGFLRIRGGDNPLDITAVH
PESYPVVQKIAQSLGTTIDDLIRKPELIEKVKLEGFATASVGMYTLGDIREELRKPGRDPRDQFVAPKWREDVREIADLQ
PGMTLEGVVTNVTRFGAFIDVGVHNDGLVHVSQLANRFVKDASEVVKAGQIVKVQVISADPKTKRIALSMKALDAAPPEP
KRKHFQAPTPPKPTMEESLAKLQNKFKR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=775, Percent_Identity=32.258064516129, Blast_Score=371, Evalue=1e-102,
Organism=Homo sapiens, GI27597090, Length=619, Percent_Identity=23.2633279483037, Blast_Score=103, Evalue=8e-22,
Organism=Escherichia coli, GI87082262, Length=715, Percent_Identity=48.6713286713287, Blast_Score=645, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=82, Percent_Identity=39.0243902439024, Blast_Score=66, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=717, Percent_Identity=30.4044630404463, Blast_Score=256, Evalue=2e-68,
Organism=Caenorhabditis elegans, GI17552892, Length=258, Percent_Identity=27.5193798449612, Blast_Score=71, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321552, Length=270, Percent_Identity=27.037037037037, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI62484314, Length=746, Percent_Identity=32.3056300268097, Blast_Score=365, Evalue=1e-101,
Organism=Drosophila melanogaster, GI24640080, Length=724, Percent_Identity=20.7182320441989, Blast_Score=91, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 83212; Mature: 83081

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELKALPTPVLLHIAKLLAVPLKGMSAVIALLDEGATVPFIARYRKEVTGNLDEVQIRD
CCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHH
IQEKLEYFRELEDRRETVLASIEEQGKLTPELKAKILATLEKTELEDLYLPYKPKRRTKA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
SIARDKGLEPLALFLWEQSDPTPLSQVAARFGMPAEEALEGARHIVAEMVSEKAEFRKAV
HHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RAMMMTEGRVSSRAIEGVPDPEGKYKMYVSYAEPASKIPSHRMLAIRRGAKEGILTFEIE
HHHHHHCCCHHHHHCCCCCCCCCCEEEEEEECCCHHHCCCHHHHHHHCCCCCCEEEEEEE
LEKPQPLAWLRSHVVKAPGPWVPHLEEAIEDSYDRLLKPSIQTEVRLELKDRSDEEAIKV
ECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH
FRENLENLLLSPPAGRMTVLALDPGIRTGCKIAVVDDTGKFLENSVIYPFEPKNDTAGSR
HHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCHH
KTLASLIARYNVQAIAIGNGTASRESAAFVQEFLRSANLASIFSVTVSESGASVYSASEM
HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHEEEEECCCCCHHHHHHHH
ARQEFPELDLTIRGAISIARRLQDPLAELVKVDPKSIGVGQYQHDVDQRRLKASLEATVE
HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SCVNRVGVDLNTASWALLRYVAGITERTAIKITEYRNDHGRFRSRMDLMAVPGFGPKTFE
HHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCEEECCCCCHHHHH
QAAGFLRIRGGDNPLDITAVHPESYPVVQKIAQSLGTTIDDLIRKPELIEKVKLEGFATA
HCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCEEEC
SVGMYTLGDIREELRKPGRDPRDQFVAPKWREDVREIADLQPGMTLEGVVTNVTRFGAFI
CCCHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEE
DVGVHNDGLVHVSQLANRFVKDASEVVKAGQIVKVQVISADPKTKRIALSMKALDAAPPE
EEECCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEHHHHCCCCCC
PKRKHFQAPTPPKPTMEESLAKLQNKFKR
CHHHCCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
AELKALPTPVLLHIAKLLAVPLKGMSAVIALLDEGATVPFIARYRKEVTGNLDEVQIRD
CCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHH
IQEKLEYFRELEDRRETVLASIEEQGKLTPELKAKILATLEKTELEDLYLPYKPKRRTKA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
SIARDKGLEPLALFLWEQSDPTPLSQVAARFGMPAEEALEGARHIVAEMVSEKAEFRKAV
HHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RAMMMTEGRVSSRAIEGVPDPEGKYKMYVSYAEPASKIPSHRMLAIRRGAKEGILTFEIE
HHHHHHCCCHHHHHCCCCCCCCCCEEEEEEECCCHHHCCCHHHHHHHCCCCCCEEEEEEE
LEKPQPLAWLRSHVVKAPGPWVPHLEEAIEDSYDRLLKPSIQTEVRLELKDRSDEEAIKV
ECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH
FRENLENLLLSPPAGRMTVLALDPGIRTGCKIAVVDDTGKFLENSVIYPFEPKNDTAGSR
HHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCCHH
KTLASLIARYNVQAIAIGNGTASRESAAFVQEFLRSANLASIFSVTVSESGASVYSASEM
HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHEEEEECCCCCHHHHHHHH
ARQEFPELDLTIRGAISIARRLQDPLAELVKVDPKSIGVGQYQHDVDQRRLKASLEATVE
HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SCVNRVGVDLNTASWALLRYVAGITERTAIKITEYRNDHGRFRSRMDLMAVPGFGPKTFE
HHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCEEECCCCCHHHHH
QAAGFLRIRGGDNPLDITAVHPESYPVVQKIAQSLGTTIDDLIRKPELIEKVKLEGFATA
HCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCEEEC
SVGMYTLGDIREELRKPGRDPRDQFVAPKWREDVREIADLQPGMTLEGVVTNVTRFGAFI
CCCHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEE
DVGVHNDGLVHVSQLANRFVKDASEVVKAGQIVKVQVISADPKTKRIALSMKALDAAPPE
EEECCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEHHHHCCCCCC
PKRKHFQAPTPPKPTMEESLAKLQNKFKR
CHHHCCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]