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The map label for this gene is hybB [H]

Identifier: 116625967

GI number: 116625967

Start: 8697138

End: 8698388

Strand: Direct

Name: hybB [H]

Synonym: Acid_6925

Alternate gene names: 116625967

Gene position: 8697138-8698388 (Clockwise)

Preceding gene: 116625966

Following gene: 116625968

Centisome position: 87.27

GC content: 60.75

Gene sequence:

>1251_bases
ATGCGATGGAGTTCGACTTACCCCAACGCCTGGCGCCGGGCCATCGTTTTGGGCGGCCGCGTGATCACGTTGCCGTTTGT
TGTAGTCTCCGCGATCGCGGCGCTCGGCCTGTTACTCAGTCTTTGGCGCGAGTGGGCGGGGCTAGGCCCGGTCTCCGGAC
TCAACGATGGTTATGCGTGGGGTCTTTATAAAAACTTCAACGTCACCACCCTCACCGCTCTGGGCTCGGGAGGCTACGCG
CTCGGCGTGCTCGTGTATGTCTTCAACCGCCGCAAGTACCACGTGATCATGCGCACCGCGCTGCTCACCAGCATCCTTTG
CTACACCTCCGGCATGTTGGCGCTTACCGTGGATGTGGGACGGCCGTGGAACCTGATGTGGCTCGCCATTCCGTGGGCAT
GGAATACCCATTCCGTCCTCTTTGAGGTCGCGCTATGCATGACGGCCTATGTGATGATCGCGCTGGATCTGGAGAATCTC
ACGCCGCTGCTCGAGCAGCTCGAAGAGAAACACTTCCCGCCGGTGGTCAACGAACTTGCGCGGCTCGCCTTCCGCGTGGT
GAAAGTGCTCTATCCGTATGGCGTCGCGCTCGCCTTCGTGCTGCCCAGCATGCACCAATCTTCGCTGGGTTCGCTGATGT
ATCAGGCCGGCTACCGGGTTCACCCTGTCTGGCAGACACCCATGCTGCCGCTGCTCTATTTGGTGATGGCCTGGGTGCTC
GGTCTCGCGTTCGTGGTACTGGTTTTGCAGGCATCCTGCGCCATCTGGAAGCTCCCGGTGGATTGGCCATTACTGGCCTC
GGTGGCGAAGATCGCGGGCTGGCTCGGCTTGGCCTGGATCGCGCTCCGCGTCGGCGATGTGGCCGTCCGCGGCGTCCTGC
CCAAAGCATTTCAGTGGGATCTTTACACCTGGGTGTTCCTGGCCGAAATGCTCCTGGTGCTGATTCCCGCCGCGCTGCTG
ACGGCGCGGGGCATGCTCGCCCGGCCGCGCCGCGTGTTTAATCTTTTGCTGCTGCTTTGCGCCGGTGGGATGCTCTACCG
CTACACCCCCACCACAATCGCCTTCCAGCCGGGCGATAATTACGCGTATTTTCCCGCCGTCCCTGAATTGCTGATGAGCC
TCGGCTTCATCGCCCTCGCTGTGATGGGCTTTCTGTTCACGGTCAAGAAGTTTCCGATTCTTCCCGTACCCATGAATCTC
TACCTGAAATCGACGCAGACAAACGATTGGAATAAGGAGCACGCCGCATGA

Upstream 100 bases:

>100_bases
TTTACGGCGTTCTGCTTGGGTTTACACGGCACTTCTTTAAGAAGCACCTCGAGGAAGCCGAACAGGAAAGAGCCGAAACG
GGCCTCAAGGAGCAACTCTA

Downstream 100 bases:

>100_bases
GCAAGCGAATCGTCATCGACCCGGTAACCCGCATCGAGGGTCATTTACGCATCGATGTGGAAGTAGACGCCGGGCGCGTC
AGCGGCGCCTGGGCTTCGGG

Product: nickel-dependent hydrogenase, membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MRWSSTYPNAWRRAIVLGGRVITLPFVVVSAIAALGLLLSLWREWAGLGPVSGLNDGYAWGLYKNFNVTTLTALGSGGYA
LGVLVYVFNRRKYHVIMRTALLTSILCYTSGMLALTVDVGRPWNLMWLAIPWAWNTHSVLFEVALCMTAYVMIALDLENL
TPLLEQLEEKHFPPVVNELARLAFRVVKVLYPYGVALAFVLPSMHQSSLGSLMYQAGYRVHPVWQTPMLPLLYLVMAWVL
GLAFVVLVLQASCAIWKLPVDWPLLASVAKIAGWLGLAWIALRVGDVAVRGVLPKAFQWDLYTWVFLAEMLLVLIPAALL
TARGMLARPRRVFNLLLLLCAGGMLYRYTPTTIAFQPGDNYAYFPAVPELLMSLGFIALAVMGFLFTVKKFPILPVPMNL
YLKSTQTNDWNKEHAA

Sequences:

>Translated_416_residues
MRWSSTYPNAWRRAIVLGGRVITLPFVVVSAIAALGLLLSLWREWAGLGPVSGLNDGYAWGLYKNFNVTTLTALGSGGYA
LGVLVYVFNRRKYHVIMRTALLTSILCYTSGMLALTVDVGRPWNLMWLAIPWAWNTHSVLFEVALCMTAYVMIALDLENL
TPLLEQLEEKHFPPVVNELARLAFRVVKVLYPYGVALAFVLPSMHQSSLGSLMYQAGYRVHPVWQTPMLPLLYLVMAWVL
GLAFVVLVLQASCAIWKLPVDWPLLASVAKIAGWLGLAWIALRVGDVAVRGVLPKAFQWDLYTWVFLAEMLLVLIPAALL
TARGMLARPRRVFNLLLLLCAGGMLYRYTPTTIAFQPGDNYAYFPAVPELLMSLGFIALAVMGFLFTVKKFPILPVPMNL
YLKSTQTNDWNKEHAA
>Mature_416_residues
MRWSSTYPNAWRRAIVLGGRVITLPFVVVSAIAALGLLLSLWREWAGLGPVSGLNDGYAWGLYKNFNVTTLTALGSGGYA
LGVLVYVFNRRKYHVIMRTALLTSILCYTSGMLALTVDVGRPWNLMWLAIPWAWNTHSVLFEVALCMTAYVMIALDLENL
TPLLEQLEEKHFPPVVNELARLAFRVVKVLYPYGVALAFVLPSMHQSSLGSLMYQAGYRVHPVWQTPMLPLLYLVMAWVL
GLAFVVLVLQASCAIWKLPVDWPLLASVAKIAGWLGLAWIALRVGDVAVRGVLPKAFQWDLYTWVFLAEMLLVLIPAALL
TARGMLARPRRVFNLLLLLCAGGMLYRYTPTTIAFQPGDNYAYFPAVPELLMSLGFIALAVMGFLFTVKKFPILPVPMNL
YLKSTQTNDWNKEHAA

Specific function: Probable b-type cytochrome [H]

COG id: COG5557

COG function: function code C; Polysulphide reductase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI2367183, Length=405, Percent_Identity=38.0246913580247, Blast_Score=234, Evalue=6e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 46454; Mature: 46454

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWSSTYPNAWRRAIVLGGRVITLPFVVVSAIAALGLLLSLWREWAGLGPVSGLNDGYAW
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
GLYKNFNVTTLTALGSGGYALGVLVYVFNRRKYHVIMRTALLTSILCYTSGMLALTVDVG
EEEECCCEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
RPWNLMWLAIPWAWNTHSVLFEVALCMTAYVMIALDLENLTPLLEQLEEKHFPPVVNELA
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RLAFRVVKVLYPYGVALAFVLPSMHQSSLGSLMYQAGYRVHPVWQTPMLPLLYLVMAWVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
GLAFVVLVLQASCAIWKLPVDWPLLASVAKIAGWLGLAWIALRVGDVAVRGVLPKAFQWD
HHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LYTWVFLAEMLLVLIPAALLTARGMLARPRRVFNLLLLLCAGGMLYRYTPTTIAFQPGDN
HHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCCCCEEEECCCEEEECCCCC
YAYFPAVPELLMSLGFIALAVMGFLFTVKKFPILPVPMNLYLKSTQTNDWNKEHAA
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MRWSSTYPNAWRRAIVLGGRVITLPFVVVSAIAALGLLLSLWREWAGLGPVSGLNDGYAW
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
GLYKNFNVTTLTALGSGGYALGVLVYVFNRRKYHVIMRTALLTSILCYTSGMLALTVDVG
EEEECCCEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECC
RPWNLMWLAIPWAWNTHSVLFEVALCMTAYVMIALDLENLTPLLEQLEEKHFPPVVNELA
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RLAFRVVKVLYPYGVALAFVLPSMHQSSLGSLMYQAGYRVHPVWQTPMLPLLYLVMAWVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
GLAFVVLVLQASCAIWKLPVDWPLLASVAKIAGWLGLAWIALRVGDVAVRGVLPKAFQWD
HHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LYTWVFLAEMLLVLIPAALLTARGMLARPRRVFNLLLLLCAGGMLYRYTPTTIAFQPGDN
HHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCCCCEEEECCCEEEECCCCC
YAYFPAVPELLMSLGFIALAVMGFLFTVKKFPILPVPMNLYLKSTQTNDWNKEHAA
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8021226; 9278503 [H]