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The map label for this gene is 116625853

Identifier: 116625853

GI number: 116625853

Start: 8536552

End: 8537814

Strand: Reverse

Name: 116625853

Synonym: Acid_6807

Alternate gene names: NA

Gene position: 8537814-8536552 (Counterclockwise)

Preceding gene: 116625856

Following gene: 116625852

Centisome position: 85.67

GC content: 61.68

Gene sequence:

>1263_bases
ATGCTCAACCTGGAGGATTTTATGAACATACGCGATTTGAAACAAAAAGGGTGGACCGTATCGGCAATCGCCGGCGAACT
CCACCTCGACCGCAAGACCGTACGCAAGCATCTGCTGGAGGCGCCTCAGCCCTACAAGCGAGAGAACCCGGCGCCCTGTA
AGATCGATCCCCACCGCCCCTTCTTACGGGAGCGATGGGAAGCCGGTGTTCACAACGCCCGCAAACTGCTGGACGAGCTT
CGTGACCGCGGTTACACCGGCGGCTACTCGCAGTTGAAACTGGCCGTGCTGCCCTGGCGGGAGGAGGGCCGCGAGCGAGC
CTTCGTGCGCTTCGAGACCGGCCCCGGCGAACAGAGCCAGATGGATTGGGGCCACTTCGGTAACTGGGATGGACGGCGCC
TCTACGGCTTCGCCCTGACGCTGTGCTATTCGCGCATGCGCTACATCGAGTTCACGCAGAGCCAGGACATCCATCACCTG
CTGGCCTGCATGGTGCACGCCTTCCGCTATTTCGGTGGCGTCACCGAAAGCGTGCTCACCGACCGTATGAAGACCGTGCT
CATCGATCAAACCGGCGGTGAGTTGCACTTCAACCAGAAGTTCCTCCAGTTCGCCGCCTACTACGGTTTCGTGCCCCGCG
TCTGTCGTCCCTATCGGCCGGAAACCAAGGGCAAGATTGAGTCGAGCGTACGCTTCGTCAAGCAGAACTTCTGGCCCGGG
ATCTCTTTCTCCTCGCTGGCTGACCTGAACCAGCAGGCCCGCGCCTGGATGGGAAAGGTGAATCACCAGTCTCACTCCAC
CACGCGAGAAGTTCCCTACGGGCGTCTGCCTCACGAACAGCTTCTGCTCCTCGACGAGCAGCCCGATTACGACACCAGCT
ACATGGAAGATCGCCGCGTGGCCAAAGACTGCATGCTCAGCTATCGCGGCAATCGTTACTCGGTGCCGTTCCGCTTTGCC
GGCAAGACCGTGTTGGTACGGGAGCCGGTGGCCGGCGGGCGCATCGAGATTTACAGCGACATCCACATCATCGCCGAACA
TCGGCTGGCCACAGGGCGTGGCGTGATGGTCAGTGATCCCACCCACTATGAAGGTTTGGCCGAAAGGCAGCGGCTGCGCG
GACCGGCACCGCCATCGGATGGCTCGCCAAACCTGCTGGAACTGGCGCCGGGCCCGGGAGTCGGTCGCGGGTTTCTGGCG
CCGGAAGTGGAACAGCGTTCGCTGGACGTGTACCAGGAGGTAGCCGATGTCGCTGCAATCTGA

Upstream 100 bases:

>100_bases
GCCGGTCCAAAATTCCCCAAAAGTGCCGATTGAAAATTCCCCAGTAGCGCCGGTCTATAAATCCCCAGGTGTGAAAACGT
TGGGCTGACCAAGGAGCCCA

Downstream 100 bases:

>100_bases
ACGACTGCAACTACTCATGCAACGGCTGAGCCTCAACGAAATGGTGCATGGCTATCAAGCTCTGGCAGAGCAGGCTGCCC
AAAAGAACTTGCCGTACTGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MLNLEDFMNIRDLKQKGWTVSAIAGELHLDRKTVRKHLLEAPQPYKRENPAPCKIDPHRPFLRERWEAGVHNARKLLDEL
RDRGYTGGYSQLKLAVLPWREEGRERAFVRFETGPGEQSQMDWGHFGNWDGRRLYGFALTLCYSRMRYIEFTQSQDIHHL
LACMVHAFRYFGGVTESVLTDRMKTVLIDQTGGELHFNQKFLQFAAYYGFVPRVCRPYRPETKGKIESSVRFVKQNFWPG
ISFSSLADLNQQARAWMGKVNHQSHSTTREVPYGRLPHEQLLLLDEQPDYDTSYMEDRRVAKDCMLSYRGNRYSVPFRFA
GKTVLVREPVAGGRIEIYSDIHIIAEHRLATGRGVMVSDPTHYEGLAERQRLRGPAPPSDGSPNLLELAPGPGVGRGFLA
PEVEQRSLDVYQEVADVAAI

Sequences:

>Translated_420_residues
MLNLEDFMNIRDLKQKGWTVSAIAGELHLDRKTVRKHLLEAPQPYKRENPAPCKIDPHRPFLRERWEAGVHNARKLLDEL
RDRGYTGGYSQLKLAVLPWREEGRERAFVRFETGPGEQSQMDWGHFGNWDGRRLYGFALTLCYSRMRYIEFTQSQDIHHL
LACMVHAFRYFGGVTESVLTDRMKTVLIDQTGGELHFNQKFLQFAAYYGFVPRVCRPYRPETKGKIESSVRFVKQNFWPG
ISFSSLADLNQQARAWMGKVNHQSHSTTREVPYGRLPHEQLLLLDEQPDYDTSYMEDRRVAKDCMLSYRGNRYSVPFRFA
GKTVLVREPVAGGRIEIYSDIHIIAEHRLATGRGVMVSDPTHYEGLAERQRLRGPAPPSDGSPNLLELAPGPGVGRGFLA
PEVEQRSLDVYQEVADVAAI
>Mature_420_residues
MLNLEDFMNIRDLKQKGWTVSAIAGELHLDRKTVRKHLLEAPQPYKRENPAPCKIDPHRPFLRERWEAGVHNARKLLDEL
RDRGYTGGYSQLKLAVLPWREEGRERAFVRFETGPGEQSQMDWGHFGNWDGRRLYGFALTLCYSRMRYIEFTQSQDIHHL
LACMVHAFRYFGGVTESVLTDRMKTVLIDQTGGELHFNQKFLQFAAYYGFVPRVCRPYRPETKGKIESSVRFVKQNFWPG
ISFSSLADLNQQARAWMGKVNHQSHSTTREVPYGRLPHEQLLLLDEQPDYDTSYMEDRRVAKDCMLSYRGNRYSVPFRFA
GKTVLVREPVAGGRIEIYSDIHIIAEHRLATGRGVMVSDPTHYEGLAERQRLRGPAPPSDGSPNLLELAPGPGVGRGFLA
PEVEQRSLDVYQEVADVAAI

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR006120
- InterPro:   IPR012337 [H]

Pfam domain/function: PF02796 HTH_7; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 48239; Mature: 48239

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNLEDFMNIRDLKQKGWTVSAIAGELHLDRKTVRKHLLEAPQPYKRENPAPCKIDPHRP
CCCHHHHHHHHHHHHCCCEEEEEHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCC
FLRERWEAGVHNARKLLDELRDRGYTGGYSQLKLAVLPWREEGRERAFVRFETGPGEQSQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCC
MDWGHFGNWDGRRLYGFALTLCYSRMRYIEFTQSQDIHHLLACMVHAFRYFGGVTESVLT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
DRMKTVLIDQTGGELHFNQKFLQFAAYYGFVPRVCRPYRPETKGKIESSVRFVKQNFWPG
HHHHEEEEECCCCCEEHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
ISFSSLADLNQQARAWMGKVNHQSHSTTREVPYGRLPHEQLLLLDEQPDYDTSYMEDRRV
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHEEEECCCCCCCCHHHHHHHH
AKDCMLSYRGNRYSVPFRFAGKTVLVREPVAGGRIEIYSDIHIIAEHRLATGRGVMVSDP
HHHHHHHHCCCEEECEEEECCCEEEEECCCCCCEEEEECCEEEEEHHHCCCCCCEEECCC
THYEGLAERQRLRGPAPPSDGSPNLLELAPGPGVGRGFLAPEVEQRSLDVYQEVADVAAI
CHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLNLEDFMNIRDLKQKGWTVSAIAGELHLDRKTVRKHLLEAPQPYKRENPAPCKIDPHRP
CCCHHHHHHHHHHHHCCCEEEEEHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCC
FLRERWEAGVHNARKLLDELRDRGYTGGYSQLKLAVLPWREEGRERAFVRFETGPGEQSQ
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCC
MDWGHFGNWDGRRLYGFALTLCYSRMRYIEFTQSQDIHHLLACMVHAFRYFGGVTESVLT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
DRMKTVLIDQTGGELHFNQKFLQFAAYYGFVPRVCRPYRPETKGKIESSVRFVKQNFWPG
HHHHEEEEECCCCCEEHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
ISFSSLADLNQQARAWMGKVNHQSHSTTREVPYGRLPHEQLLLLDEQPDYDTSYMEDRRV
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHEEEECCCCCCCCHHHHHHHH
AKDCMLSYRGNRYSVPFRFAGKTVLVREPVAGGRIEIYSDIHIIAEHRLATGRGVMVSDP
HHHHHHHHCCCEEECEEEECCCEEEEECCCCCCEEEEECCEEEEEHHHCCCCCCEEECCC
THYEGLAERQRLRGPAPPSDGSPNLLELAPGPGVGRGFLAPEVEQRSLDVYQEVADVAAI
CHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]