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The map label for this gene is 116625841

Identifier: 116625841

GI number: 116625841

Start: 8524937

End: 8525512

Strand: Reverse

Name: 116625841

Synonym: Acid_6794

Alternate gene names: NA

Gene position: 8525512-8524937 (Counterclockwise)

Preceding gene: 116625842

Following gene: 116625839

Centisome position: 85.55

GC content: 63.02

Gene sequence:

>576_bases
ATGGGAAGCGGCGTATTGTGCAGCGACGCGGCGAAATACGCCTCGTCGTCCGGCATTTCCAGGCGGCTGCGTTATGCGAA
TCCAGGATGCCCGTTGCGGATTGGTACGGTTGAGTTCCTCGTCCTGCTTGCGCAACGCGGCCGCGGATACCGACCTCAAT
ATCGAACCCCGCGGGCGGGAAGAGGGACGCCACCGAAGCGATTCGCAACTGATCGAGACTGTCGCTCGGCGGGCGGAACG
CTGGTTTATGTCCCGGAGTATATGCGAGGCTGGCGCAGCTATTTCGGCTTCTGCGAAACGCCAGAAGTGCTGATCGGTTT
AACGCGCTGGGTCCGGTTGCGACTCCGGGCGGCCATGTCGCGACAGTGGAAAACACCGCGCCGTCGCAGGGCGGCTCTGT
TGGAACTGGGGGTGCGAGAGCCGCTGGCGAGCAATACCGACGGCAGCCGTCGCGGCCCTTGGTATCTCGCGAAGGCCAAA
GCCTTGGCTGTTGGGCTTTCTAATGCGTACTTCAAATCGCTCGAACCGCCGTGTACGGACCCGTACGCACGTGGTGTGGC
AGGGGTCGGCGGGTGA

Upstream 100 bases:

>100_bases
GCTTCAAGATGACTTCCTCGACCGTTGCATCCCCGACGCCGAGAACGAGTTCCTTCGGCTTGCCCGCCCAGGTAGTACGC
AGCAGCGTTCCCTTGAGCCC

Downstream 100 bases:

>100_bases
CCGCCGCCCCTATGCCGATCAAACGGCGTTATCGGACAAGTGGACTTCAGGTCAGGCGAGCGGCGGCACTTTTCAGACAC
TTTCTTGCCACTGGCCGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: Recombinase; Group II Intron-Encoded Maturase

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MGSGVLCSDAAKYASSSGISRRLRYANPGCPLRIGTVEFLVLLAQRGRGYRPQYRTPRAGRGTPPKRFATDRDCRSAGGT
LVYVPEYMRGWRSYFGFCETPEVLIGLTRWVRLRLRAAMSRQWKTPRRRRAALLELGVREPLASNTDGSRRGPWYLAKAK
ALAVGLSNAYFKSLEPPCTDPYARGVAGVGG

Sequences:

>Translated_191_residues
MGSGVLCSDAAKYASSSGISRRLRYANPGCPLRIGTVEFLVLLAQRGRGYRPQYRTPRAGRGTPPKRFATDRDCRSAGGT
LVYVPEYMRGWRSYFGFCETPEVLIGLTRWVRLRLRAAMSRQWKTPRRRRAALLELGVREPLASNTDGSRRGPWYLAKAK
ALAVGLSNAYFKSLEPPCTDPYARGVAGVGG
>Mature_190_residues
GSGVLCSDAAKYASSSGISRRLRYANPGCPLRIGTVEFLVLLAQRGRGYRPQYRTPRAGRGTPPKRFATDRDCRSAGGTL
VYVPEYMRGWRSYFGFCETPEVLIGLTRWVRLRLRAAMSRQWKTPRRRRAALLELGVREPLASNTDGSRRGPWYLAKAKA
LAVGLSNAYFKSLEPPCTDPYARGVAGVGG

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21148; Mature: 21016

Theoretical pI: Translated: 11.35; Mature: 11.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSGVLCSDAAKYASSSGISRRLRYANPGCPLRIGTVEFLVLLAQRGRGYRPQYRTPRAG
CCCCCCCHHHHHHHHHCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCC
RGTPPKRFATDRDCRSAGGTLVYVPEYMRGWRSYFGFCETPEVLIGLTRWVRLRLRAAMS
CCCCCHHHCCCCHHHHCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
RQWKTPRRRRAALLELGVREPLASNTDGSRRGPWYLAKAKALAVGLSNAYFKSLEPPCTD
HHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCC
PYARGVAGVGG
HHHHCCCCCCC
>Mature Secondary Structure 
GSGVLCSDAAKYASSSGISRRLRYANPGCPLRIGTVEFLVLLAQRGRGYRPQYRTPRAG
CCCCCCHHHHHHHHHCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCC
RGTPPKRFATDRDCRSAGGTLVYVPEYMRGWRSYFGFCETPEVLIGLTRWVRLRLRAAMS
CCCCCHHHCCCCHHHHCCCEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
RQWKTPRRRRAALLELGVREPLASNTDGSRRGPWYLAKAKALAVGLSNAYFKSLEPPCTD
HHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCC
PYARGVAGVGG
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA