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The map label for this gene is degU [H]

Identifier: 116625456

GI number: 116625456

Start: 8020089

End: 8020625

Strand: Direct

Name: degU [H]

Synonym: Acid_6401

Alternate gene names: 116625456

Gene position: 8020089-8020625 (Clockwise)

Preceding gene: 116625455

Following gene: 116625461

Centisome position: 80.48

GC content: 67.23

Gene sequence:

>537_bases
GTGATTCGTGTCCGGATCGCTGCATCGTCCGCGGTGGTGAAGGCCGGGTTGGACGCCCTGGTGGCGTCCAACCCGGCGTT
GCTGCCCACGGAGTCGTACGCCGATGTGGTGTTGGCTGCCGGGACATTGGACGAGCTGACCCCCGCGCCGGCGATCGTGC
TGCTCGGCGACGTCGTGTGGAGCAGCGAAGCCCTGCGGGTGGGCGTGCGTGCGATCCTCGCCGCCGACGCTCCGGGCGCG
GAGATTCTGGCCGCGATCGAAGCCGCGGCAGCCGGATTGGCGGCGATCGATCCGCGCGACCTGGAAGCTTTGCTGCCCGC
ATCGCCGCAGGCCGTGGCAGGTCCGCTGACTCCACGCGAGTTGGAGGTGCTGCGCATGCTCGCGGAAGGCGCTGCGAACA
AGAACATCGCCTGGAAACTCGGCATCAGCGAACACACTGTGAAGTTTCACGTCGCGCAGATCCTCGGAAAGCTGAACGCC
GGAACCCGCACGGAGGCCGTGACGCTGGGGATCCGGAAAGGCCTGATCCTCTTGTAA

Upstream 100 bases:

>100_bases
ACAGCGGCCGGCCGACGCTCCGCCTGCACTTCCTGCGCGACGACCCCAAGCGGGTCCGCGAAGCCGTCGTGCTGCTCGCC
GCGCGGGTGGAGGCCGCTGC

Downstream 100 bases:

>100_bases
AAGCCCTACATCAAGAACGAGACAGCGCCGCTGAATTCCCACATAAGGAGTCGGCCGGAAGCATTCGGCAGATTGAACGG
TTTGCCCATGTTGTACTGCC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protease production enhancer protein [H]

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MIRVRIAASSAVVKAGLDALVASNPALLPTESYADVVLAAGTLDELTPAPAIVLLGDVVWSSEALRVGVRAILAADAPGA
EILAAIEAAAAGLAAIDPRDLEALLPASPQAVAGPLTPRELEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNA
GTRTEAVTLGIRKGLILL

Sequences:

>Translated_178_residues
MIRVRIAASSAVVKAGLDALVASNPALLPTESYADVVLAAGTLDELTPAPAIVLLGDVVWSSEALRVGVRAILAADAPGA
EILAAIEAAAAGLAAIDPRDLEALLPASPQAVAGPLTPRELEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNA
GTRTEAVTLGIRKGLILL
>Mature_178_residues
MIRVRIAASSAVVKAGLDALVASNPALLPTESYADVVLAAGTLDELTPAPAIVLLGDVVWSSEALRVGVRAILAADAPGA
EILAAIEAAAAGLAAIDPRDLEALLPASPQAVAGPLTPRELEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNA
GTRTEAVTLGIRKGLILL

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 18199; Mature: 18199

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVRIAASSAVVKAGLDALVASNPALLPTESYADVVLAAGTLDELTPAPAIVLLGDVVW
CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHCCCCCEEEEEHHHHH
SSEALRVGVRAILAADAPGAEILAAIEAAAAGLAAIDPRDLEALLPASPQAVAGPLTPRE
CCHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHH
LEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNAGTRTEAVTLGIRKGLILL
HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEC
>Mature Secondary Structure
MIRVRIAASSAVVKAGLDALVASNPALLPTESYADVVLAAGTLDELTPAPAIVLLGDVVW
CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHCCCCCEEEEEHHHHH
SSEALRVGVRAILAADAPGAEILAAIEAAAAGLAAIDPRDLEALLPASPQAVAGPLTPRE
CCHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCHHH
LEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNAGTRTEAVTLGIRKGLILL
HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3136143; 3141378; 3141377; 9384377 [H]