| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is pheT
Identifier: 116625452
GI number: 116625452
Start: 8015354
End: 8017663
Strand: Direct
Name: pheT
Synonym: Acid_6397
Alternate gene names: 116625452
Gene position: 8015354-8017663 (Clockwise)
Preceding gene: 116625451
Following gene: 116625453
Centisome position: 80.43
GC content: 64.68
Gene sequence:
>2310_bases GTGAAGTTCTCCTACAACTGGATCCGCGAATTCGTACCCGGCCTGACCCAGGCCGCCGCTCCGCTGGAACGGCTGATCAC CATGAAGACCGCCGAGTGCGAGGGCATCGAGGAAGAGGGCAAGCTTCTCACCATCGCCCGCGTGGCGCGCGTCGAAACCG TCGAGCCGATTCCCGACAGCCACAACGTGAAGGCCGTGGTCGATGCCGGCCCGCTGGGTCGCAAGACCGTGGTCTGCGGC GCTCCCAACTGCCGCCCCGGCATCCTCACCGCGTACGCTCCCATCGGCAGGAAGGTCGTCAGCGGCGTGGAGAGCGACGG CATGCTCGCCTCCGGCGCCGAACTCGGCATCAACAAAGATCACGATGGCATCGTCGAACTGAACGCCCCCCTAGGCGAAC CCATCCCCGGCTGCGAGCCGGATGCTGCCATTGAGATCGATAACAAGAGCATCACCCACCGCCCCGACCTTTGGGGACAC CACGGCATGGCGCGTGAAGTCGCCGCCATCCTCGGCCTGCCGCTCACCGATCACGCGAAGCTGGACCTGCTGCCCGAAGG CGTCCCCGCCATTCGGGTGCAGATCGAGGACCTCGCCCTTTGTCCGCGATACAGCGCGCTGGTCTTCGAAAACGTTACCG TGCAGCCTTCGCCGCTCTGGCTGCAATACCGCCTCACCGCGATCGGCTTGAACCCCATCAACAACATCGTGGACATGACG AATTTCGTGATGGCCGAACTCGCCCAGCCCATGCACGCCTTCGATGCCGATCTGCTGAAAGGGGATACGATCTTCGTCCG TCCCGCGAAAGCCGGCGAATACTTCGTCGCCTTGAATGATGAGGAGTACACGCTCGATCCGAGCAACCTCGTGATTGCCG ATGCTTCGGGCGCGATCGCGCTGGCCGGCGTGATCGGCGGCAAGGGCAGCGCGATCGGCGATACCACCACCCGCGTCGTA CTCGAAAGCGCGAACTTCCAGGCGTCGTCGGTCCGCAAAACCTCGTCGGCAATCAAGCTGCGCACCGACGCCAGCATGCG TTTCGAGAAGGCGCAGGATCCGAGCAACACCGTGCGCGGCCTCGCGCGCGCCATCGAACTGCTCCGCGAAATTTCACCCG GCATCCGCCTGGTGGGCGGTGTCGCCGATCAGCGCCGCGAAATCCCCGCGCCGCCGCCCATCGAACTGCCGCTCGCGTGG CTGCAGCGCAAATTGGGCCGCGCCATCGAAGCCTCGGAAGTTCGCCGCATTCTCGAAAGCCTGGCATTCGGTGTCAGCGA GCCCACCCCCGGAGTCTTCTCCGTGACCGTGCCGAGTTGGCGTGCCACCAAGGACATCTCGATCAAAGACGATCTGGTGG AGGAGGTCGGCCGCATGATTGGCTACGATTCCATCGCGCCGCAAGCGCCCCTGGTGCCGGCCTCGGTGCCGCCCGGCAAT CCCTCGCGCCGATTCCAACATGACGTGCGAAATCTCTTCGTCGATAACGGCTTCACCGAAGTCTACAACTACAGCTTTCT GAGCGAGGCCTCGGTCCGCGCTTTCGGCTTCGATTCGGCCTCGATGATTCGGGTCACCAATCCCATCGCGAGCGATCAGG AATTGATGCGCTCCTCCCTGCTGCCCGGCATCTGGCGCAACGTCACCGAAAACGCAAAGCACCACGAGAGCTTCCGCCTG TTCGAAATCGGCCTGGAAATTCACCGCCGAGACACCGGCCTCCCCAACGAGATCCCTCACCTGATCGCCGCCTATTACGA CCGCCAGGGCGATGGCCAGCCCGGCCTGTTCGAACTGAAGCGCCTGGCGCGGTGCCTGATGCCGAACGCGCAGACTGTGC CGGCGGCCGCACGCGAATTCGAGCACACCGCACGCGCCGCCGAAATCCAGGTCGCAGGCCAGACCGTGGGCCGTCTCTTT GAACTCCATCCGAAGCTGGTGGAGACTGGACGCGCCGCCATTCTCGATCTCGACCTGCGCCTCGTCCAATCCCTGACCGC CGGCGAGACCAGGTACACGCCCATCCGCCGCTATCCCTCGAGCGCGTTCGACCTCTCCGTGCTGGCCGGATTGCGCGAGC AGGCCGGCACACTCCAAGCCGCCATCGCGAGTTTCGCCGGACCGCTCCAGGAATCCATCCAGTTCGTGCGCCAGTATGTG GGGCCGCCGCTGGCCGACGGCGTGAAGAGCGTCTCCTTCCGCCTCACCGTCGGCTCTCCCGAACGAACACTCTCTTCCGA AGAGATCACCGCCGTGCGCAACGCCATCATCGAGGGCATGCGCGCCAAGGGCTACGAACTCCGCGTGTGA
Upstream 100 bases:
>100_bases CCGCCTCGTCATGATGCGCTACGCCATCGACGATATCCGCCAGTTGCAAGGCGGCGATCTCCGTTTCCTCGAGCAGTTTT AAATTGGAGCAGCTCTAACC
Downstream 100 bases:
>100_bases GCACCAGTCGCACCAAGCCAGGCGGATGGGTCAAGCGGAAGCGCGGCCCCTGCCGCTGGTGCGGCGGCGAAGTACCTGCC AAGCGCTACACCTTCTGCAG
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MKFSYNWIREFVPGLTQAAAPLERLITMKTAECEGIEEEGKLLTIARVARVETVEPIPDSHNVKAVVDAGPLGRKTVVCG APNCRPGILTAYAPIGRKVVSGVESDGMLASGAELGINKDHDGIVELNAPLGEPIPGCEPDAAIEIDNKSITHRPDLWGH HGMAREVAAILGLPLTDHAKLDLLPEGVPAIRVQIEDLALCPRYSALVFENVTVQPSPLWLQYRLTAIGLNPINNIVDMT NFVMAELAQPMHAFDADLLKGDTIFVRPAKAGEYFVALNDEEYTLDPSNLVIADASGAIALAGVIGGKGSAIGDTTTRVV LESANFQASSVRKTSSAIKLRTDASMRFEKAQDPSNTVRGLARAIELLREISPGIRLVGGVADQRREIPAPPPIELPLAW LQRKLGRAIEASEVRRILESLAFGVSEPTPGVFSVTVPSWRATKDISIKDDLVEEVGRMIGYDSIAPQAPLVPASVPPGN PSRRFQHDVRNLFVDNGFTEVYNYSFLSEASVRAFGFDSASMIRVTNPIASDQELMRSSLLPGIWRNVTENAKHHESFRL FEIGLEIHRRDTGLPNEIPHLIAAYYDRQGDGQPGLFELKRLARCLMPNAQTVPAAAREFEHTARAAEIQVAGQTVGRLF ELHPKLVETGRAAILDLDLRLVQSLTAGETRYTPIRRYPSSAFDLSVLAGLREQAGTLQAAIASFAGPLQESIQFVRQYV GPPLADGVKSVSFRLTVGSPERTLSSEEITAVRNAIIEGMRAKGYELRV
Sequences:
>Translated_769_residues MKFSYNWIREFVPGLTQAAAPLERLITMKTAECEGIEEEGKLLTIARVARVETVEPIPDSHNVKAVVDAGPLGRKTVVCG APNCRPGILTAYAPIGRKVVSGVESDGMLASGAELGINKDHDGIVELNAPLGEPIPGCEPDAAIEIDNKSITHRPDLWGH HGMAREVAAILGLPLTDHAKLDLLPEGVPAIRVQIEDLALCPRYSALVFENVTVQPSPLWLQYRLTAIGLNPINNIVDMT NFVMAELAQPMHAFDADLLKGDTIFVRPAKAGEYFVALNDEEYTLDPSNLVIADASGAIALAGVIGGKGSAIGDTTTRVV LESANFQASSVRKTSSAIKLRTDASMRFEKAQDPSNTVRGLARAIELLREISPGIRLVGGVADQRREIPAPPPIELPLAW LQRKLGRAIEASEVRRILESLAFGVSEPTPGVFSVTVPSWRATKDISIKDDLVEEVGRMIGYDSIAPQAPLVPASVPPGN PSRRFQHDVRNLFVDNGFTEVYNYSFLSEASVRAFGFDSASMIRVTNPIASDQELMRSSLLPGIWRNVTENAKHHESFRL FEIGLEIHRRDTGLPNEIPHLIAAYYDRQGDGQPGLFELKRLARCLMPNAQTVPAAAREFEHTARAAEIQVAGQTVGRLF ELHPKLVETGRAAILDLDLRLVQSLTAGETRYTPIRRYPSSAFDLSVLAGLREQAGTLQAAIASFAGPLQESIQFVRQYV GPPLADGVKSVSFRLTVGSPERTLSSEEITAVRNAIIEGMRAKGYELRV >Mature_769_residues MKFSYNWIREFVPGLTQAAAPLERLITMKTAECEGIEEEGKLLTIARVARVETVEPIPDSHNVKAVVDAGPLGRKTVVCG APNCRPGILTAYAPIGRKVVSGVESDGMLASGAELGINKDHDGIVELNAPLGEPIPGCEPDAAIEIDNKSITHRPDLWGH HGMAREVAAILGLPLTDHAKLDLLPEGVPAIRVQIEDLALCPRYSALVFENVTVQPSPLWLQYRLTAIGLNPINNIVDMT NFVMAELAQPMHAFDADLLKGDTIFVRPAKAGEYFVALNDEEYTLDPSNLVIADASGAIALAGVIGGKGSAIGDTTTRVV LESANFQASSVRKTSSAIKLRTDASMRFEKAQDPSNTVRGLARAIELLREISPGIRLVGGVADQRREIPAPPPIELPLAW LQRKLGRAIEASEVRRILESLAFGVSEPTPGVFSVTVPSWRATKDISIKDDLVEEVGRMIGYDSIAPQAPLVPASVPPGN PSRRFQHDVRNLFVDNGFTEVYNYSFLSEASVRAFGFDSASMIRVTNPIASDQELMRSSLLPGIWRNVTENAKHHESFRL FEIGLEIHRRDTGLPNEIPHLIAAYYDRQGDGQPGLFELKRLARCLMPNAQTVPAAAREFEHTARAAEIQVAGQTVGRLF ELHPKLVETGRAAILDLDLRLVQSLTAGETRYTPIRRYPSSAFDLSVLAGLREQAGTLQAAIASFAGPLQESIQFVRQYV GPPLADGVKSVSFRLTVGSPERTLSSEEITAVRNAIIEGMRAKGYELRV
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain
Homologues:
Organism=Escherichia coli, GI1788006, Length=818, Percent_Identity=31.9070904645477, Blast_Score=298, Evalue=1e-81,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYFB_SOLUE (Q01SP7)
Other databases:
- EMBL: CP000473 - RefSeq: YP_827608.1 - ProteinModelPortal: Q01SP7 - STRING: Q01SP7 - GeneID: 4425426 - GenomeReviews: CP000473_GR - KEGG: sus:Acid_6397 - NMPDR: fig|234267.9.peg.6078 - eggNOG: COG0072 - HOGENOM: HBG399638 - OMA: FPRERIA - GO: GO:0005737 - HAMAP: MF_00283 - InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 - Gene3D: G3DSA:3.50.40.10 - Gene3D: G3DSA:3.30.56.20 - Gene3D: G3DSA:3.30.70.380 - Gene3D: G3DSA:2.40.50.140 - SMART: SM00873 - SMART: SM00874 - SMART: SM00896 - TIGRFAMs: TIGR00472
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind; SSF56037 B3_4; SSF54991 Fdx_AntiC_bd; SSF50249 Nucleic_acid_OB; SSF46955 Putativ_DNA_bind
EC number: =6.1.1.20
Molecular weight: Translated: 83592; Mature: 83592
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: PS51483 B5; PS51447 FDX_ACB; PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFSYNWIREFVPGLTQAAAPLERLITMKTAECEGIEEEGKLLTIARVARVETVEPIPDS CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCCCCC HNVKAVVDAGPLGRKTVVCGAPNCRPGILTAYAPIGRKVVSGVESDGMLASGAELGINKD CCEEEEEECCCCCCCEEEECCCCCCCCCEEEHHHHHHHHHCCCCCCCCEECCCCCCCCCC HDGIVELNAPLGEPIPGCEPDAAIEIDNKSITHRPDLWGHHGMAREVAAILGLPLTDHAK CCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC LDLLPEGVPAIRVQIEDLALCPRYSALVFENVTVQPSPLWLQYRLTAIGLNPINNIVDMT EEECCCCCCEEEEEEEHHHCCCCCCCCEEECCCCCCCCEEEEEEEEEECCCHHHHHHHHH NFVMAELAQPMHAFDADLLKGDTIFVRPAKAGEYFVALNDEEYTLDPSNLVIADASGAIA HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCEEECCCCEEEECCCCCEE LAGVIGGKGSAIGDTTTRVVLESANFQASSVRKTSSAIKLRTDASMRFEKAQDPSNTVRG EEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHCCEEEEECCCCHHHHCCCCHHHHHHH LARAIELLREISPGIRLVGGVADQRREIPAPPPIELPLAWLQRKLGRAIEASEVRRILES HHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH LAFGVSEPTPGVFSVTVPSWRATKDISIKDDLVEEVGRMIGYDSIAPQAPLVPASVPPGN HHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PSRRFQHDVRNLFVDNGFTEVYNYSFLSEASVRAFGFDSASMIRVTNPIASDQELMRSSL CHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHC LPGIWRNVTENAKHHESFRLFEIGLEIHRRDTGLPNEIPHLIAAYYDRQGDGQPGLFELK CCHHHHHHHHCCHHHCCEEEEEECHHHEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH RLARCLMPNAQTVPAAAREFEHTARAAEIQVAGQTVGRLFELHPKLVETGRAAILDLDLR HHHHHHCCCCCCCHHHHHHHHHHHHHHEEEECHHHHHHHHHHCHHHHHCCCEEEEEHHHH LVQSLTAGETRYTPIRRYPSSAFDLSVLAGLREQAGTLQAAIASFAGPLQESIQFVRQYV HHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GPPLADGVKSVSFRLTVGSPERTLSSEEITAVRNAIIEGMRAKGYELRV CCCHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCCEECC >Mature Secondary Structure MKFSYNWIREFVPGLTQAAAPLERLITMKTAECEGIEEEGKLLTIARVARVETVEPIPDS CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCCCCC HNVKAVVDAGPLGRKTVVCGAPNCRPGILTAYAPIGRKVVSGVESDGMLASGAELGINKD CCEEEEEECCCCCCCEEEECCCCCCCCCEEEHHHHHHHHHCCCCCCCCEECCCCCCCCCC HDGIVELNAPLGEPIPGCEPDAAIEIDNKSITHRPDLWGHHGMAREVAAILGLPLTDHAK CCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC LDLLPEGVPAIRVQIEDLALCPRYSALVFENVTVQPSPLWLQYRLTAIGLNPINNIVDMT EEECCCCCCEEEEEEEHHHCCCCCCCCEEECCCCCCCCEEEEEEEEEECCCHHHHHHHHH NFVMAELAQPMHAFDADLLKGDTIFVRPAKAGEYFVALNDEEYTLDPSNLVIADASGAIA HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCEEECCCCEEEECCCCCEE LAGVIGGKGSAIGDTTTRVVLESANFQASSVRKTSSAIKLRTDASMRFEKAQDPSNTVRG EEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHCCEEEEECCCCHHHHCCCCHHHHHHH LARAIELLREISPGIRLVGGVADQRREIPAPPPIELPLAWLQRKLGRAIEASEVRRILES HHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH LAFGVSEPTPGVFSVTVPSWRATKDISIKDDLVEEVGRMIGYDSIAPQAPLVPASVPPGN HHCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PSRRFQHDVRNLFVDNGFTEVYNYSFLSEASVRAFGFDSASMIRVTNPIASDQELMRSSL CHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHC LPGIWRNVTENAKHHESFRLFEIGLEIHRRDTGLPNEIPHLIAAYYDRQGDGQPGLFELK CCHHHHHHHHCCHHHCCEEEEEECHHHEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH RLARCLMPNAQTVPAAAREFEHTARAAEIQVAGQTVGRLFELHPKLVETGRAAILDLDLR HHHHHHCCCCCCCHHHHHHHHHHHHHHEEEECHHHHHHHHHHCHHHHHCCCEEEEEHHHH LVQSLTAGETRYTPIRRYPSSAFDLSVLAGLREQAGTLQAAIASFAGPLQESIQFVRQYV HHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GPPLADGVKSVSFRLTVGSPERTLSSEEITAVRNAIIEGMRAKGYELRV CCCHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA