Click here to switch to the map view.

The map label for this gene is petB [H]

Identifier: 116625263

GI number: 116625263

Start: 7785932

End: 7787569

Strand: Reverse

Name: petB [H]

Synonym: Acid_6208

Alternate gene names: 116625263

Gene position: 7787569-7785932 (Counterclockwise)

Preceding gene: 116625264

Following gene: 116625256

Centisome position: 78.14

GC content: 61.9

Gene sequence:

>1638_bases
GTGAGGCGGCGAATCCGGTTCTTCAACGAATGGGTGGATCACCGCACCGGTATCCAGACCGCGGTTCGCAATTTCCTGTA
CGAGGAGATTCCGGCCTCCAGCGGCTGGCGCCAGGTATTCGGCAGCGTCGCCATGTTTCTCTTCATGGTGCAGGCCTTTA
CCGGAATTCTGCTGGCGTTCAACTATGCGCCCACCCCCGGCGAGGCCTACAACAGCCTGCGCTACATCCTCACGGAACTG
ACCGCCGGCCGGCTGATGCGCGGCCTCCATCACTGGGGTGCGAGCATGATCATCGTGGTGGTGGTGCTCCACATGGTGCA
GGTTTTTCTCTACGGCGCCTACAAGAAGCCGCGTGAAGCCACGTGGATGGTTGGGGTCGTGCTGTTCCTTGTCACCCTGG
CTTACGGGCTGACTGGCTACCTCCTGCCCTGGGACAACCGCGCGTACTGGGGCACCGTGGTGGCTACGAAGATCGCGGCG
CAGGCGCCGGTCGTGGGTCCGTACCTGAGCCGGCTGTTGGGCGGTGAAGGCTCGGTCGGCGTAGTGACATTCGCGCGATT
CTACGGGCTGCACGTTCTGTTGCTGCCGCCGGCGACCATCTTCCTGGTGATCCTGCACGTCTTCCTGGTGCGTAAACACG
GCGTGGCCCCCGTGCCGGGCGACGAACTGCTGCCGAAGAAGCAATTCTATCCGGCGCAGGTTTTTAAGGATACCGTTGCC
ATCTTTATCGCATTCGCGGTGCTGTTTGCGCTGGCCGTAGCCGTGCGCGTCCCGTTGGAACAACTCGCGGACCCGACCGA
CACCTCTTATGTTCCGCGCCCCGAGTGGTATTTCCTGTTCCTCTTCCAGACACTCAAAATGTTCGATGGCCCGCTCGAAG
TTGTGGGGAGTGTGGTGCTGCCGGGGTTGGCGGTCCTGGCCCTGATCCTGGTGCCGTTTATCGATCGCGGCCATATGGTG
AAAGTGACGCGTCGGACCGCTGCCCTGGCCTTTGTGCTGCTGGCGGCCGTCGGTTGGGGTGGGTTGACCCTGGCGGCGGT
GAAGTCCACGCCAAAGGAGGCGAACGCAGTGGAAGTAGACTACTCCGCGCCCACGGATTGGATGCAGCTGTCGCCCGAGG
AGATGGCGGGCGTGGCCTACTTCCGTCAGGAGAACTGCATCAGCTGCCACGTCGTAGGCGAGCATGGCACCGCGGTGGGT
CCCGACCTCACCAAGACCTCGATTCACAAGGATGCTGCGTGGATGATCGAGCATTTCAAGCGCCCTTCCGCGATCCGTCC
CGGAACTTCGATGCCGCCCATCCAACTCACCGACGCCCAGTTGAACTCGCTCGCGGCCTTCCTGCTGAAGCTCAACGAAA
GGAACGCCACCGCGCTCGATAACGCACCCGAGTTCGCCACTCAGGGCGCCCTCGTGTACCAGGCCAATCACTGCGGCAAC
TGTCACATGGTTAACGGCATCGGCATGCGCGTTGGCCCTCCCCTGAATGGCCTCTCCAAGCGCGAAGGCCGGAGTTGGGT
CGAAGACCACTTCGCCAATCCCCAAAAGCTGGTACCGACCTCCATCATGCCGTCCTACAAACTGTCGCCCAGAGACCTCG
AAAACCTGACGACTTATCTGTTTGCGCTGCCAGACTAA

Upstream 100 bases:

>100_bases
TTTCCGGACCCGCGCCGCGCCCGCTCGACCGGTATCAGACCAAGATCGAGGGCAACAAGCTCATGGTCGGGAAACTAAAC
GTCTCCGCGGAGCGCAAGTC

Downstream 100 bases:

>100_bases
GAACGATTTTGGCCGTGTTCATCCGTGGCCCATATTTCTTTTTTCATGCCACCGACAACGCCTCCGCCGAGCGGATCCCT
TCGGATTCCAGGACGCCGGC

Product: cytochrome b/b6 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MRRRIRFFNEWVDHRTGIQTAVRNFLYEEIPASSGWRQVFGSVAMFLFMVQAFTGILLAFNYAPTPGEAYNSLRYILTEL
TAGRLMRGLHHWGASMIIVVVVLHMVQVFLYGAYKKPREATWMVGVVLFLVTLAYGLTGYLLPWDNRAYWGTVVATKIAA
QAPVVGPYLSRLLGGEGSVGVVTFARFYGLHVLLLPPATIFLVILHVFLVRKHGVAPVPGDELLPKKQFYPAQVFKDTVA
IFIAFAVLFALAVAVRVPLEQLADPTDTSYVPRPEWYFLFLFQTLKMFDGPLEVVGSVVLPGLAVLALILVPFIDRGHMV
KVTRRTAALAFVLLAAVGWGGLTLAAVKSTPKEANAVEVDYSAPTDWMQLSPEEMAGVAYFRQENCISCHVVGEHGTAVG
PDLTKTSIHKDAAWMIEHFKRPSAIRPGTSMPPIQLTDAQLNSLAAFLLKLNERNATALDNAPEFATQGALVYQANHCGN
CHMVNGIGMRVGPPLNGLSKREGRSWVEDHFANPQKLVPTSIMPSYKLSPRDLENLTTYLFALPD

Sequences:

>Translated_545_residues
MRRRIRFFNEWVDHRTGIQTAVRNFLYEEIPASSGWRQVFGSVAMFLFMVQAFTGILLAFNYAPTPGEAYNSLRYILTEL
TAGRLMRGLHHWGASMIIVVVVLHMVQVFLYGAYKKPREATWMVGVVLFLVTLAYGLTGYLLPWDNRAYWGTVVATKIAA
QAPVVGPYLSRLLGGEGSVGVVTFARFYGLHVLLLPPATIFLVILHVFLVRKHGVAPVPGDELLPKKQFYPAQVFKDTVA
IFIAFAVLFALAVAVRVPLEQLADPTDTSYVPRPEWYFLFLFQTLKMFDGPLEVVGSVVLPGLAVLALILVPFIDRGHMV
KVTRRTAALAFVLLAAVGWGGLTLAAVKSTPKEANAVEVDYSAPTDWMQLSPEEMAGVAYFRQENCISCHVVGEHGTAVG
PDLTKTSIHKDAAWMIEHFKRPSAIRPGTSMPPIQLTDAQLNSLAAFLLKLNERNATALDNAPEFATQGALVYQANHCGN
CHMVNGIGMRVGPPLNGLSKREGRSWVEDHFANPQKLVPTSIMPSYKLSPRDLENLTTYLFALPD
>Mature_545_residues
MRRRIRFFNEWVDHRTGIQTAVRNFLYEEIPASSGWRQVFGSVAMFLFMVQAFTGILLAFNYAPTPGEAYNSLRYILTEL
TAGRLMRGLHHWGASMIIVVVVLHMVQVFLYGAYKKPREATWMVGVVLFLVTLAYGLTGYLLPWDNRAYWGTVVATKIAA
QAPVVGPYLSRLLGGEGSVGVVTFARFYGLHVLLLPPATIFLVILHVFLVRKHGVAPVPGDELLPKKQFYPAQVFKDTVA
IFIAFAVLFALAVAVRVPLEQLADPTDTSYVPRPEWYFLFLFQTLKMFDGPLEVVGSVVLPGLAVLALILVPFIDRGHMV
KVTRRTAALAFVLLAAVGWGGLTLAAVKSTPKEANAVEVDYSAPTDWMQLSPEEMAGVAYFRQENCISCHVVGEHGTAVG
PDLTKTSIHKDAAWMIEHFKRPSAIRPGTSMPPIQLTDAQLNSLAAFLLKLNERNATALDNAPEFATQGALVYQANHCGN
CHMVNGIGMRVGPPLNGLSKREGRSWVEDHFANPQKLVPTSIMPSYKLSPRDLENLTTYLFALPD

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetB subfamily [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=259, Percent_Identity=30.8880308880309, Blast_Score=114, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6226529, Length=310, Percent_Identity=29.6774193548387, Blast_Score=117, Evalue=7e-27,
Organism=Saccharomyces cerevisiae, GI6226532, Length=227, Percent_Identity=31.2775330396476, Blast_Score=107, Evalue=7e-24,
Organism=Saccharomyces cerevisiae, GI6226531, Length=146, Percent_Identity=32.8767123287671, Blast_Score=81, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6226530, Length=123, Percent_Identity=31.7073170731707, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: 1.10.2.-

Molecular weight: Translated: 60258; Mature: 60258

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS51007 CYTC ; PS51002 CYTB_NTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EECCC
>Mature Secondary Structure
MRRRIRFFNEWVDHRTGIQTAVRNFLYEEIPASSGWRQVFGSVAMFLFMVQAFTGILLAF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
NYAPTPGEAYNSLRYILTELTAGRLMRGLHHWGASMIIVVVVLHMVQVFLYGAYKKPREA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
TWMVGVVLFLVTLAYGLTGYLLPWDNRAYWGTVVATKIAAQAPVVGPYLSRLLGGEGSVG
HHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCH
VVTFARFYGLHVLLLPPATIFLVILHVFLVRKHGVAPVPGDELLPKKQFYPAQVFKDTVA
HHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
IFIAFAVLFALAVAVRVPLEQLADPTDTSYVPRPEWYFLFLFQTLKMFDGPLEVVGSVVL
HHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
PGLAVLALILVPFIDRGHMVKVTRRTAALAFVLLAAVGWGGLTLAAVKSTPKEANAVEVD
HHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEHHCCCCCCCEEEEE
YSAPTDWMQLSPEEMAGVAYFRQENCISCHVVGEHGTAVGPDLTKTSIHKDAAWMIEHFK
CCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
RPSAIRPGTSMPPIQLTDAQLNSLAAFLLKLNERNATALDNAPEFATQGALVYQANHCGN
CCCCCCCCCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCEEEEECCCCCC
CHMVNGIGMRVGPPLNGLSKREGRSWVEDHFANPQKLVPTSIMPSYKLSPRDLENLTTYL
EEEECCCCCCCCCCCCCCCHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FALPD
EECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA