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The map label for this gene is ytfQ [H]

Identifier: 116625233

GI number: 116625233

Start: 7746465

End: 7747436

Strand: Direct

Name: ytfQ [H]

Synonym: Acid_6178

Alternate gene names: 116625233

Gene position: 7746465-7747436 (Clockwise)

Preceding gene: 116625232

Following gene: 116625238

Centisome position: 77.73

GC content: 60.7

Gene sequence:

>972_bases
ATGAAGCGTCGATTGTGGATGACTACCGGACTGGCGAGCGCCGTCCTATTGGCCGGTTGCGGCGGCGAAGTCAAGAAGAA
GCAGTTCGTGGTGGCCTTCAGCCAGGCCAACAACGCCGAGCCCTATCGCGCGGCGCAAAACGCCCTGATGGAAAAACTCT
TCGCCGCGCAGCCCGACGTCAAACTTGTGATCAGCGACGCGCAGCAGGACAACAGCAAGCAGGTGGCGCAGGTCGAGACC
TTCATCCGCCAGAAGCCCGACCTTCTGATCGTCGCTCCCAACGAGCGGGCCGCGCTGACCGCCGTTATGGGCCAGGCGAT
GGAGGCAAAGATTCCCGTCATCTGCCTGGAGCGCGACATTCTCCAGCCCAACTACACATCTTATATCCACAGCGACAATG
TCGCGATCGGCCGCCTGGCCGGGCAGTTCATCGTGGGCCACCTGACGAAGAAGTACGGCAAGCCCGCCGGCAATGTGGTT
GCCATGCGCGGCTTGCTCGGCGTGGAAGGCGAGATCAATCGGGACCGCGGCGCCAAGGAGATCCTGGACAAATATCCCGA
GATCAAAATCGTTGCCGACCCGGTGGCCGACTGGATCCAGGCCAAAGCCAAGGACCGCATGACTGAGGTACTGCGCGCAC
AGCCCAAGATCGATGTGGTCTACGGCCACAACGACCCGATGGCGATCGGCGCGTATCTCGGGGCCAAGGAACTGGGCCGC
GAGAAAGAGATGATCTTCGTTGGCGTGGATGGTCTCGGCGGGCCGGCCGGAGGAATCAAGAAGGTAATGGACGGCGTCCT
CGCCGCCACTTTCGTTTACCCTCTATGGGTCGATAAGGCAGTCGAAATCGGCACCCGGATCCTTCGCGAGCCCGGCTTCG
TTCCGGCCAAAGACTACGTCCTGGAATCCGTCATGGTCACCACGGAAAACGCCCCGCAGATGTATGAGAAATTCACGTTA
ACATTACGCTAG

Upstream 100 bases:

>100_bases
GCTGCGCCTCAACAATGTGGATAGCAATGTCGAGATGATGATCAAAGCCGTGATCATCGTGTTGGCCGTGGCGGTGCAGC
GCGGGAGGAATGGAAACTAA

Downstream 100 bases:

>100_bases
CTATCTAAGATAACGGACCCGATTATCGCGATTTCAATTACAATCCAATAGTGATAAATCGGTCGTTAGCGGGCAAGCTG
CGGATCTGCTGCCTGCTCCT

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDVKLVISDAQQDNSKQVAQVET
FIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDILQPNYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVV
AMRGLLGVEGEINRDRGAKEILDKYPEIKIVADPVADWIQAKAKDRMTEVLRAQPKIDVVYGHNDPMAIGAYLGAKELGR
EKEMIFVGVDGLGGPAGGIKKVMDGVLAATFVYPLWVDKAVEIGTRILREPGFVPAKDYVLESVMVTTENAPQMYEKFTL
TLR

Sequences:

>Translated_323_residues
MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDVKLVISDAQQDNSKQVAQVET
FIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDILQPNYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVV
AMRGLLGVEGEINRDRGAKEILDKYPEIKIVADPVADWIQAKAKDRMTEVLRAQPKIDVVYGHNDPMAIGAYLGAKELGR
EKEMIFVGVDGLGGPAGGIKKVMDGVLAATFVYPLWVDKAVEIGTRILREPGFVPAKDYVLESVMVTTENAPQMYEKFTL
TLR
>Mature_323_residues
MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDVKLVISDAQQDNSKQVAQVET
FIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDILQPNYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVV
AMRGLLGVEGEINRDRGAKEILDKYPEIKIVADPVADWIQAKAKDRMTEVLRAQPKIDVVYGHNDPMAIGAYLGAKELGR
EKEMIFVGVDGLGGPAGGIKKVMDGVLAATFVYPLWVDKAVEIGTRILREPGFVPAKDYVLESVMVTTENAPQMYEKFTL
TLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790674, Length=300, Percent_Identity=30, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1790192, Length=230, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790526, Length=200, Percent_Identity=28.5, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35355; Mature: 35355

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDV
CCCEEEEHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
KLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDI
EEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC
LQPNYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINRDRGAKE
CCCCCHHEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCHHH
ILDKYPEIKIVADPVADWIQAKAKDRMTEVLRAQPKIDVVYGHNDPMAIGAYLGAKELGR
HHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHCHHHHCC
EKEMIFVGVDGLGGPAGGIKKVMDGVLAATFVYPLWVDKAVEIGTRILREPGFVPAKDYV
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
LESVMVTTENAPQMYEKFTLTLR
HHHHHEECCCCHHHHHHEEEEEC
>Mature Secondary Structure
MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDV
CCCEEEEHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
KLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDI
EEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC
LQPNYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINRDRGAKE
CCCCCHHEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCHHH
ILDKYPEIKIVADPVADWIQAKAKDRMTEVLRAQPKIDVVYGHNDPMAIGAYLGAKELGR
HHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHCHHHHCC
EKEMIFVGVDGLGGPAGGIKKVMDGVLAATFVYPLWVDKAVEIGTRILREPGFVPAKDYV
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
LESVMVTTENAPQMYEKFTLTLR
HHHHHEECCCCHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 9298646 [H]