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The map label for this gene is rbsC [H]

Identifier: 116625232

GI number: 116625232

Start: 7745505

End: 7746464

Strand: Direct

Name: rbsC [H]

Synonym: Acid_6177

Alternate gene names: 116625232

Gene position: 7745505-7746464 (Clockwise)

Preceding gene: 116625231

Following gene: 116625233

Centisome position: 77.72

GC content: 63.44

Gene sequence:

>960_bases
ATGCTGGATGCCAAACTGCTTCGCCGCGCGCGGAGCCTCGTCGCGCTCCTCGGCATCCTGGTCCTCGCCGTGATCATCAG
CCCGACCGCCGCCGATGGCTCGCGCATCTTTCTCCAGGCCGGCAACCTCACCGATATCCTGCGCCAGATCTCCCTGATCG
GCATTCTCTCGCTGGCTATGACCTTCGTCATTCTCACCGGCGGTATCGATCTCAGCGTCGGCAGCATCCTCGCGCTCTCC
ACCGCGATTACCGCCATGTTCCTCACGCGCGGCTACACCGCGCACATCGCGGTCGCCATCCTGGCGGCGGTCCTCGCCTC
CGCGCTGGCCGGAGCGTTGAATGGCGTCGTCATCGCGGCCACTCGCATTCAACCGTTCATCGTCACCCTGGCCTCCATGA
TCGGCGTGCGCGGGCTCGCTAAATGGCTCACCAGCAATCAGAACATCGATATCGGTTTTGGCCGCGACCTGGCGGCGGAA
TTCGCCGCTGTCTTCCGCGAGAAGGCCATCGTCATCGGCGCCTACGCGGCTGCCGCGGCGCTCTTCTGGTTCGCCCTCTC
GCGCACCGTGTTCGGCCGCCACGTGCGCGCTGTCGGCGATAACGAGAAGGCCGCCGAATATGCCGGCCTGCCTATCGCCG
CCACCAAAATCTGGGTCTACACGCTCTCCGGTTTGTTCAGCGGCTTTGCCGGAGTGCTCTACGCCGCCGAGAATCACAAG
GGCAATCCCAACGCCGGGGTCGCCTACGAATTGGACGCGATCGCCGCCGTCGTGATCGGCGGCACGCGCCTGTCCGGCGG
CAAGGGCTCGATCTCCGGAACCATTATCGGCACCTTGATCATGGGCGTCTTGACAAATATGCTGCGCCTCAACAATGTGG
ATAGCAATGTCGAGATGATGATCAAAGCCGTGATCATCGTGTTGGCCGTGGCGGTGCAGCGCGGGAGGAATGGAAACTAA

Upstream 100 bases:

>100_bases
GAGGCCGCGCCGCCGCGAGTTATGATGCCAGGGAAGCGACTCAGGAAATGATTCTATCCGCGGCCACGAATGCCGGTCCC
TCGTCCGAGGCGCATTGCTG

Downstream 100 bases:

>100_bases
ATGAAGCGTCGATTGTGGATGACTACCGGACTGGCGAGCGCCGTCCTATTGGCCGGTTGCGGCGGCGAAGTCAAGAAGAA
GCAGTTCGTGGTGGCCTTCA

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MLDAKLLRRARSLVALLGILVLAVIISPTAADGSRIFLQAGNLTDILRQISLIGILSLAMTFVILTGGIDLSVGSILALS
TAITAMFLTRGYTAHIAVAILAAVLASALAGALNGVVIAATRIQPFIVTLASMIGVRGLAKWLTSNQNIDIGFGRDLAAE
FAAVFREKAIVIGAYAAAAALFWFALSRTVFGRHVRAVGDNEKAAEYAGLPIAATKIWVYTLSGLFSGFAGVLYAAENHK
GNPNAGVAYELDAIAAVVIGGTRLSGGKGSISGTIIGTLIMGVLTNMLRLNNVDSNVEMMIKAVIIVLAVAVQRGRNGN

Sequences:

>Translated_319_residues
MLDAKLLRRARSLVALLGILVLAVIISPTAADGSRIFLQAGNLTDILRQISLIGILSLAMTFVILTGGIDLSVGSILALS
TAITAMFLTRGYTAHIAVAILAAVLASALAGALNGVVIAATRIQPFIVTLASMIGVRGLAKWLTSNQNIDIGFGRDLAAE
FAAVFREKAIVIGAYAAAAALFWFALSRTVFGRHVRAVGDNEKAAEYAGLPIAATKIWVYTLSGLFSGFAGVLYAAENHK
GNPNAGVAYELDAIAAVVIGGTRLSGGKGSISGTIIGTLIMGVLTNMLRLNNVDSNVEMMIKAVIIVLAVAVQRGRNGN
>Mature_319_residues
MLDAKLLRRARSLVALLGILVLAVIISPTAADGSRIFLQAGNLTDILRQISLIGILSLAMTFVILTGGIDLSVGSILALS
TAITAMFLTRGYTAHIAVAILAAVLASALAGALNGVVIAATRIQPFIVTLASMIGVRGLAKWLTSNQNIDIGFGRDLAAE
FAAVFREKAIVIGAYAAAAALFWFALSRTVFGRHVRAVGDNEKAAEYAGLPIAATKIWVYTLSGLFSGFAGVLYAAENHK
GNPNAGVAYELDAIAAVVIGGTRLSGGKGSISGTIIGTLIMGVLTNMLRLNNVDSNVEMMIKAVIIVLAVAVQRGRNGN

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=315, Percent_Identity=40.3174603174603, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1790524, Length=295, Percent_Identity=34.2372881355932, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI145693152, Length=276, Percent_Identity=35.5072463768116, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788896, Length=297, Percent_Identity=35.6902356902357, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI87082395, Length=329, Percent_Identity=33.7386018237082, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI145693214, Length=254, Percent_Identity=36.6141732283465, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1789992, Length=127, Percent_Identity=40.9448818897638, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787794, Length=266, Percent_Identity=29.3233082706767, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788471, Length=324, Percent_Identity=33.0246913580247, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787793, Length=290, Percent_Identity=30.6896551724138, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33104; Mature: 33104

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDAKLLRRARSLVALLGILVLAVIISPTAADGSRIFLQAGNLTDILRQISLIGILSLAM
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
TFVILTGGIDLSVGSILALSTAITAMFLTRGYTAHIAVAILAAVLASALAGALNGVVIAA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE
TRIQPFIVTLASMIGVRGLAKWLTSNQNIDIGFGRDLAAEFAAVFREKAIVIGAYAAAAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHEEEHHHHHHH
LFWFALSRTVFGRHVRAVGDNEKAAEYAGLPIAATKIWVYTLSGLFSGFAGVLYAAENHK
HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCC
GNPNAGVAYELDAIAAVVIGGTRLSGGKGSISGTIIGTLIMGVLTNMLRLNNVDSNVEMM
CCCCCCEEEEHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IKAVIIVLAVAVQRGRNGN
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLDAKLLRRARSLVALLGILVLAVIISPTAADGSRIFLQAGNLTDILRQISLIGILSLAM
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
TFVILTGGIDLSVGSILALSTAITAMFLTRGYTAHIAVAILAAVLASALAGALNGVVIAA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE
TRIQPFIVTLASMIGVRGLAKWLTSNQNIDIGFGRDLAAEFAAVFREKAIVIGAYAAAAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHEEEHHHHHHH
LFWFALSRTVFGRHVRAVGDNEKAAEYAGLPIAATKIWVYTLSGLFSGFAGVLYAAENHK
HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCC
GNPNAGVAYELDAIAAVVIGGTRLSGGKGSISGTIIGTLIMGVLTNMLRLNNVDSNVEMM
CCCCCCEEEEHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IKAVIIVLAVAVQRGRNGN
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]