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The map label for this gene is ycdK [C]

Identifier: 116625204

GI number: 116625204

Start: 7689550

End: 7690008

Strand: Direct

Name: ycdK [C]

Synonym: Acid_6149

Alternate gene names: 116625204

Gene position: 7689550-7690008 (Clockwise)

Preceding gene: 116625203

Following gene: 116625205

Centisome position: 77.16

GC content: 59.91

Gene sequence:

>459_bases
ATGAGCACGACGAATCGACGCAAGTTTCTGGGCCGCGGTGTTGCCGCCGCAGCCGCCGCCTCAGCGGCAGCCGTTCCCGC
CGCCGCGCAGGAGAAGCCCACCAAGAGGGTCATCAATCCGAGCGGAAAGAAGCCGGACAATCCCCTCTTCAGTAACGCGG
TCGCCTATGGCAATCTGCTGTTCATCGCCGGTAAAGGCTACCACTCCGAAGGCGACATCAAGGTGCATACCAAGGACGTG
CTGCGCCAGATCAAAGAAGAACTCGAACGCGCTGGCTCCTCGATGAACAAAGTATTGAAGTGCAATGTCTACCTCAACGA
CCTCAAGGACTACGCCGGAATGAACGAGGTCTTTCGGGGCAGCTTCGGAGACGAACCACCGGTGCGCACCACCATCGCCG
CCGCGGGCGGAATCCCGGGCAATTCGCTGGTGGAGATCGACGTCATCGCTTACATCTAG

Upstream 100 bases:

>100_bases
TTCGCTCGGCGAGTATGGCGATGCCAGTTGGACCGCCGAACGCCATCAATATCGCACGGGTACACGCCGCGGATAGATGT
CATTGAAAGGGAGCAAACGA

Downstream 100 bases:

>100_bases
GGATGCGCCTCTCGTTCCTCGTCTTCTGCCTGCCGCTACTTCTTCATGCGCGCGACCCGGTGCGTGTCGAAGTGGAGGAC
GAGGCGATGGGGACCACATT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MSTTNRRKFLGRGVAAAAAASAAAVPAAAQEKPTKRVINPSGKKPDNPLFSNAVAYGNLLFIAGKGYHSEGDIKVHTKDV
LRQIKEELERAGSSMNKVLKCNVYLNDLKDYAGMNEVFRGSFGDEPPVRTTIAAAGGIPGNSLVEIDVIAYI

Sequences:

>Translated_152_residues
MSTTNRRKFLGRGVAAAAAASAAAVPAAAQEKPTKRVINPSGKKPDNPLFSNAVAYGNLLFIAGKGYHSEGDIKVHTKDV
LRQIKEELERAGSSMNKVLKCNVYLNDLKDYAGMNEVFRGSFGDEPPVRTTIAAAGGIPGNSLVEIDVIAYI
>Mature_151_residues
STTNRRKFLGRGVAAAAAASAAAVPAAAQEKPTKRVINPSGKKPDNPLFSNAVAYGNLLFIAGKGYHSEGDIKVHTKDVL
RQIKEELERAGSSMNKVLKCNVYLNDLKDYAGMNEVFRGSFGDEPPVRTTIAAAGGIPGNSLVEIDVIAYI

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 16163; Mature: 16031

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTNRRKFLGRGVAAAAAASAAAVPAAAQEKPTKRVINPSGKKPDNPLFSNAVAYGNLL
CCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHCCEE
FIAGKGYHSEGDIKVHTKDVLRQIKEELERAGSSMNKVLKCNVYLNDLKDYAGMNEVFRG
EEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCHHHHHEEEEEEEHHHHHHHCCHHHHHCC
SFGDEPPVRTTIAAAGGIPGNSLVEIDVIAYI
CCCCCCCCCEEEEECCCCCCCCEEEEEEEEEC
>Mature Secondary Structure 
STTNRRKFLGRGVAAAAAASAAAVPAAAQEKPTKRVINPSGKKPDNPLFSNAVAYGNLL
CCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHCCEE
FIAGKGYHSEGDIKVHTKDVLRQIKEELERAGSSMNKVLKCNVYLNDLKDYAGMNEVFRG
EEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCHHHHHEEEEEEEHHHHHHHCCHHHHHCC
SFGDEPPVRTTIAAAGGIPGNSLVEIDVIAYI
CCCCCCCCCEEEEECCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]