| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is lptF [H]
Identifier: 116624897
GI number: 116624897
Start: 7289477
End: 7291810
Strand: Direct
Name: lptF [H]
Synonym: Acid_5821
Alternate gene names: 116624897
Gene position: 7289477-7291810 (Clockwise)
Preceding gene: 116624896
Following gene: 116624898
Centisome position: 73.15
GC content: 61.87
Gene sequence:
>2334_bases GTGCGCCTGCTGGGCCGGTACATCTTTCGCGAAATTCTGACGAGCGCGGTGCTCGGCACTCTGCTCGCCAGTTTCATTCT CTTTCTGCGCAGCGTGGACCCGATCTTCGAGCTGCTGGTGAAGAGCTCGAGCGCGAACACCAACCTGGTGCTCCAGCTGT TTGCGCTGGCGATCCCGAACGTCCTGCCGTTTACGATTCCCTTCGGGGTGCTGGTAGGAATCCTGATCGGGCTGGGGCGG CTGGCCTCGGACGGCGAGATCATCGCGATGCGGGCTGCGGGAGTTTCGAGCCGCAAGGTGATTTTCCCGGTGCTGTTGTT CGCGGCGCTGGGCGGCGGCGTGGCGGCCTTCGCCACGCTGCGGCTGACGCCTTACTCGATCCACAAATATACCGACATCG TGAACCAGCTGGAGGCCACGCAATTGACGGCGGACGTGCCGTCGCGGGTGTTCGTAGAGAATTTTCCGAACACGATTCTG TACGTGGGCGAGGTAAAGCCGGGCAACCCCTCGGTGTGGAAGAACGTTTTCGTGGCCGATGTGGCGCCGCCCGAGAAGCG ATCGGCGGGCATGCGCGATAAGGCGATGGGCCCGATGATCACGGTGGCGGAACAGGCGATCGCGGTGCCGGACGTGACCA ATAACCGGCTGCAGCTGACGCTGCGCAACTACTCGACGCACGAGATGAGCAAGGACCTGAGCTCGCGCGATACGATCGCG CCGACCGGCCAGCAGGCGCTGACGGCATCGCCGCCCTCGCAGACTCCGTTGCGCTCGATCGGCATGGGCACGCGGCAGCT GCTGGCGTACCCGCGCGGCAAGCCGGACTGGGTGGAGTACCAGATCGAGCTGCACAAGCGCTTCGCGCTGCCCGTGGCGT GCATCATGCTGGCGATGGTCGGGATTCCGCTGGGGATCGCGACGCGCAAGGGCGGGCGGTCGGCGGGCTACGTGAATGCG ATCTTCGTCGCGTTCTTCTGTTATTACATGGGCTTCGTTTCGCTGATCGGGCTGGCGCGGCAGAAGACGCTGCCGGTGCC GGTAGCGTTGTGGCTGCCCAACGCCGTGTTCTTCGTGGTGGGCGTGATCTTCCTGGCGCGGCTGGAGTTGCCGGGCGATA AGGATTATTTCGGTGATTTGCGCGGACGCGTCGCGGTGTTTTTCCGGGCGCTGAAGGCGCGCGTAGTTCCCGAGGACTCG GCCGGGCTCGGCGGGTGGCGCATTCCGCTGCTGCCGCAGCTGGTGGACACGTACATTCTTTCGAATTTCGTGACGTACCT GGTGCTGATGCTGGCGAGTTTTGTTTCGCTGGAATTGATCCGCAATTTCTTCGAGCTGATCAACGACATGCTGCGCAACA ATATCTCGCTCAAGATCATGTTCAAGTACCTTTTCTTCCTGAGCCCGCAGCTGATTTACCAGATGCTGCCGGTCAGCATC CTGGTGGCGGTGCTGGCGGCCTTCGGGGTGATGAGCAAGCAGAACGAGATCACGGCATTCAAGGCCTGCGGGGTCAGCCT GTTCCGGCTGGCGGCGCCGATCCTGGTGGGCAGCGTGCTGCTGAGCGGGGGGCTGTTCGCGTTCGACTTTTACTATGTCG CCAATGCGAATCGGATTCAGGACGCACTCCGCGATCAGATCAAGGGTCGAGCGACGCAGACCTACCTGCGGCCGGACCGC ACGTGGAAGATGGGGTACGATTCGCTGCGCATCTTCAACTACCGCTACTTCGATAACTCGGGCGAGGAGAGCACCATGAG CGAAGCGAGCGTGTTCGAACTGGAACCGAAGACGTTTCGCCTGCAGCGCCAGATTTTCGCGCGACAGGCGCACTGGAACG CGTCGCTGAAGACCTGGGTTTTCGAGGATGGCTGGACTTGCGAGTACAAGGGCCCCAACTGCGATGCGTACGCGCGGTTC CAGGCAACGACATTTCGCGAATTGACGGAGCCACCCGATTACTTCCTGAAGGAAGCGCGGAAGGACGAGCAGATGAATTT TCTGCAGCTCGACAGTTACATCAAAGACCTGACGCAGAGCGGATTCGAGGGCACTTCGAAGCTACAGGTGCGGTTCTATC GCAAGTTCTCGCTGCCGTTGTTCGCCCTGATCATGGCGCTGATCGCGGTTCCCTTCGGTTTCCTGGTGGGCAGCCGCGGG GCGATGACGGGTATCGGAATCAGTATCGGGATCGCCGTGGCGTATATCGCGTTGGGTCAGCTATTCGAGAAGGTGGGCGA CGTGAACCTGCTCTCGCCGGCGACGGCGGCGTGGGCTCCGGACGTGGTGTTCGCGCTGGCGGGCACTTACCTGTTTTTGC GGATGAAGAGTTAG
Upstream 100 bases:
>100_bases CTCGATCCTGATCGATGACCTGGAGCTGCATCCGGTGGAAGACGAACTGCCGAAGCTGCCGGTGGTGTCGCCGCCGGACA TGACGCGGTAGACGAAGCCT
Downstream 100 bases:
>100_bases AGACAGTTATCCCATTAGTTTGAGTCACAAAGAAGCGTTGCGGCGGCCGGGGACATACGGTCTTATCGCCGGGTGGGGCC CGGCCGCCAGTGATTTGACT
Product: permease YjgP/YjgQ family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 777; Mature: 777
Protein sequence:
>777_residues MRLLGRYIFREILTSAVLGTLLASFILFLRSVDPIFELLVKSSSANTNLVLQLFALAIPNVLPFTIPFGVLVGILIGLGR LASDGEIIAMRAAGVSSRKVIFPVLLFAALGGGVAAFATLRLTPYSIHKYTDIVNQLEATQLTADVPSRVFVENFPNTIL YVGEVKPGNPSVWKNVFVADVAPPEKRSAGMRDKAMGPMITVAEQAIAVPDVTNNRLQLTLRNYSTHEMSKDLSSRDTIA PTGQQALTASPPSQTPLRSIGMGTRQLLAYPRGKPDWVEYQIELHKRFALPVACIMLAMVGIPLGIATRKGGRSAGYVNA IFVAFFCYYMGFVSLIGLARQKTLPVPVALWLPNAVFFVVGVIFLARLELPGDKDYFGDLRGRVAVFFRALKARVVPEDS AGLGGWRIPLLPQLVDTYILSNFVTYLVLMLASFVSLELIRNFFELINDMLRNNISLKIMFKYLFFLSPQLIYQMLPVSI LVAVLAAFGVMSKQNEITAFKACGVSLFRLAAPILVGSVLLSGGLFAFDFYYVANANRIQDALRDQIKGRATQTYLRPDR TWKMGYDSLRIFNYRYFDNSGEESTMSEASVFELEPKTFRLQRQIFARQAHWNASLKTWVFEDGWTCEYKGPNCDAYARF QATTFRELTEPPDYFLKEARKDEQMNFLQLDSYIKDLTQSGFEGTSKLQVRFYRKFSLPLFALIMALIAVPFGFLVGSRG AMTGIGISIGIAVAYIALGQLFEKVGDVNLLSPATAAWAPDVVFALAGTYLFLRMKS
Sequences:
>Translated_777_residues MRLLGRYIFREILTSAVLGTLLASFILFLRSVDPIFELLVKSSSANTNLVLQLFALAIPNVLPFTIPFGVLVGILIGLGR LASDGEIIAMRAAGVSSRKVIFPVLLFAALGGGVAAFATLRLTPYSIHKYTDIVNQLEATQLTADVPSRVFVENFPNTIL YVGEVKPGNPSVWKNVFVADVAPPEKRSAGMRDKAMGPMITVAEQAIAVPDVTNNRLQLTLRNYSTHEMSKDLSSRDTIA PTGQQALTASPPSQTPLRSIGMGTRQLLAYPRGKPDWVEYQIELHKRFALPVACIMLAMVGIPLGIATRKGGRSAGYVNA IFVAFFCYYMGFVSLIGLARQKTLPVPVALWLPNAVFFVVGVIFLARLELPGDKDYFGDLRGRVAVFFRALKARVVPEDS AGLGGWRIPLLPQLVDTYILSNFVTYLVLMLASFVSLELIRNFFELINDMLRNNISLKIMFKYLFFLSPQLIYQMLPVSI LVAVLAAFGVMSKQNEITAFKACGVSLFRLAAPILVGSVLLSGGLFAFDFYYVANANRIQDALRDQIKGRATQTYLRPDR TWKMGYDSLRIFNYRYFDNSGEESTMSEASVFELEPKTFRLQRQIFARQAHWNASLKTWVFEDGWTCEYKGPNCDAYARF QATTFRELTEPPDYFLKEARKDEQMNFLQLDSYIKDLTQSGFEGTSKLQVRFYRKFSLPLFALIMALIAVPFGFLVGSRG AMTGIGISIGIAVAYIALGQLFEKVGDVNLLSPATAAWAPDVVFALAGTYLFLRMKS >Mature_777_residues MRLLGRYIFREILTSAVLGTLLASFILFLRSVDPIFELLVKSSSANTNLVLQLFALAIPNVLPFTIPFGVLVGILIGLGR LASDGEIIAMRAAGVSSRKVIFPVLLFAALGGGVAAFATLRLTPYSIHKYTDIVNQLEATQLTADVPSRVFVENFPNTIL YVGEVKPGNPSVWKNVFVADVAPPEKRSAGMRDKAMGPMITVAEQAIAVPDVTNNRLQLTLRNYSTHEMSKDLSSRDTIA PTGQQALTASPPSQTPLRSIGMGTRQLLAYPRGKPDWVEYQIELHKRFALPVACIMLAMVGIPLGIATRKGGRSAGYVNA IFVAFFCYYMGFVSLIGLARQKTLPVPVALWLPNAVFFVVGVIFLARLELPGDKDYFGDLRGRVAVFFRALKARVVPEDS AGLGGWRIPLLPQLVDTYILSNFVTYLVLMLASFVSLELIRNFFELINDMLRNNISLKIMFKYLFFLSPQLIYQMLPVSI LVAVLAAFGVMSKQNEITAFKACGVSLFRLAAPILVGSVLLSGGLFAFDFYYVANANRIQDALRDQIKGRATQTYLRPDR TWKMGYDSLRIFNYRYFDNSGEESTMSEASVFELEPKTFRLQRQIFARQAHWNASLKTWVFEDGWTCEYKGPNCDAYARF QATTFRELTEPPDYFLKEARKDEQMNFLQLDSYIKDLTQSGFEGTSKLQVRFYRKFSLPLFALIMALIAVPFGFLVGSRG AMTGIGISIGIAVAYIALGQLFEKVGDVNLLSPATAAWAPDVVFALAGTYLFLRMKS
Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptF/lptG family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005495 [H]
Pfam domain/function: PF03739 YjgP_YjgQ [H]
EC number: NA
Molecular weight: Translated: 86303; Mature: 86303
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLGRYIFREILTSAVLGTLLASFILFLRSVDPIFELLVKSSSANTNLVLQLFALAIPN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCC VLPFTIPFGVLVGILIGLGRLASDGEIIAMRAAGVSSRKVIFPVLLFAALGGGVAAFATL HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHH RLTPYSIHKYTDIVNQLEATQLTADVPSRVFVENFPNTILYVGEVKPGNPSVWKNVFVAD CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCCCHHHHHEEEEE VAPPEKRSAGMRDKAMGPMITVAEQAIAVPDVTNNRLQLTLRNYSTHEMSKDLSSRDTIA CCCCHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCC PTGQQALTASPPSQTPLRSIGMGTRQLLAYPRGKPDWVEYQIELHKRFALPVACIMLAMV CCCCCCEECCCCCCCCHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GIPLGIATRKGGRSAGYVNAIFVAFFCYYMGFVSLIGLARQKTLPVPVALWLPNAVFFVV HCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHH GVIFLARLELPGDKDYFGDLRGRVAVFFRALKARVVPEDSAGLGGWRIPLLPQLVDTYIL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH SNFVTYLVLMLASFVSLELIRNFFELINDMLRNNISLKIMFKYLFFLSPQLIYQMLPVSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHH LVAVLAAFGVMSKQNEITAFKACGVSLFRLAAPILVGSVLLSGGLFAFDFYYVANANRIQ HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHCCCCHHHH DALRDQIKGRATQTYLRPDRTWKMGYDSLRIFNYRYFDNSGEESTMSEASVFELEPKTFR HHHHHHHCCCHHHHHCCCCCCEECCCCCEEEEEEEECCCCCCCHHHCCCCEEEECCHHHH LQRQIFARQAHWNASLKTWVFEDGWTCEYKGPNCDAYARFQATTFRELTEPPDYFLKEAR HHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCEEEEHHHHHHHHCCCHHHHHHHHC KDEQMNFLQLDSYIKDLTQSGFEGTSKLQVRFYRKFSLPLFALIMALIAVPFGFLVGSRG CCHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCC AMTGIGISIGIAVAYIALGQLFEKVGDVNLLSPATAAWAPDVVFALAGTYLFLRMKS CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHEEEEECC >Mature Secondary Structure MRLLGRYIFREILTSAVLGTLLASFILFLRSVDPIFELLVKSSSANTNLVLQLFALAIPN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCC VLPFTIPFGVLVGILIGLGRLASDGEIIAMRAAGVSSRKVIFPVLLFAALGGGVAAFATL HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHH RLTPYSIHKYTDIVNQLEATQLTADVPSRVFVENFPNTILYVGEVKPGNPSVWKNVFVAD CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEEECCCCCCHHHHHEEEEE VAPPEKRSAGMRDKAMGPMITVAEQAIAVPDVTNNRLQLTLRNYSTHEMSKDLSSRDTIA CCCCHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCC PTGQQALTASPPSQTPLRSIGMGTRQLLAYPRGKPDWVEYQIELHKRFALPVACIMLAMV CCCCCCEECCCCCCCCHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GIPLGIATRKGGRSAGYVNAIFVAFFCYYMGFVSLIGLARQKTLPVPVALWLPNAVFFVV HCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHH GVIFLARLELPGDKDYFGDLRGRVAVFFRALKARVVPEDSAGLGGWRIPLLPQLVDTYIL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH SNFVTYLVLMLASFVSLELIRNFFELINDMLRNNISLKIMFKYLFFLSPQLIYQMLPVSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHH LVAVLAAFGVMSKQNEITAFKACGVSLFRLAAPILVGSVLLSGGLFAFDFYYVANANRIQ HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHCCCCHHHH DALRDQIKGRATQTYLRPDRTWKMGYDSLRIFNYRYFDNSGEESTMSEASVFELEPKTFR HHHHHHHCCCHHHHHCCCCCCEECCCCCEEEEEEEECCCCCCCHHHCCCCEEEECCHHHH LQRQIFARQAHWNASLKTWVFEDGWTCEYKGPNCDAYARFQATTFRELTEPPDYFLKEAR HHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCEEEEHHHHHHHHCCCHHHHHHHHC KDEQMNFLQLDSYIKDLTQSGFEGTSKLQVRFYRKFSLPLFALIMALIAVPFGFLVGSRG CCHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCC AMTGIGISIGIAVAYIALGQLFEKVGDVNLLSPATAAWAPDVVFALAGTYLFLRMKS CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]