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The map label for this gene is nrfC [H]

Identifier: 116624728

GI number: 116624728

Start: 7085083

End: 7085826

Strand: Reverse

Name: nrfC [H]

Synonym: Acid_5652

Alternate gene names: 116624728

Gene position: 7085826-7085083 (Counterclockwise)

Preceding gene: 116624729

Following gene: 116624727

Centisome position: 71.1

GC content: 60.62

Gene sequence:

>744_bases
ATGGAAATCACACGGCGAGACCTGATCGAAATCGGCGGCAAGCTCCTCATGATCGCCAGCGTCGGCGCCAGCCTGGAACA
AATCACCGGCGCCGAAGAACCCCCGGAGGTCTACAAGATGGCCGACCACTGGTGGGGCATGATCATCGATATCGATAAAT
GCATCGGCTGCGGCAACTGCGTCCGCGCCTGCTCCAACGAAAACCAGGTCCCCACGGGCTACTTCCGCACCTGGGTGGAG
CGCTACGAGGTCACCGAGGGCAATCCCAATCCGCGCGTGGAATCTCCCAACGGCGCGATCGATGGTTTTCCGCCTTCGCC
CCACACCGGCATCAAGAGCTTCTTCGTCCCCAAGCTCTGCAACCACTGCGTCGATTCGCCCTGCGTGCAGGTCTGTCCGG
TCGGCGCCACCTTTGTCAGCCCCGATGGCGTGGTGCTGGTCGATAAGGACTACTGCCTCGGCTGCCGTTACTGCGTGCAG
GCCTGCCCGTACGGTTGCCGCTACCTTCATCCCGAGCGCGAGACCGTGGATAAGTGCACACTCTGCTACCACCGCATCAC
TAAGGGACTCACCACAGCCTGCTGCGAGAACTGTCCCACCGGCGCGCGCCAGCTGGTCGATTTCAAGAATCCCAAGGATC
CGGTCCACCAATTCCTGCGCGAAAACAAAGTGATGGTCCTGAAGCCGCAGATGGCGACCCAGGCCAAGGTCTATTACAAG
AACCTGGATGGTTCGGTTCGATAA

Upstream 100 bases:

>100_bases
CCAACACCTTTCCGCAGGTGGTGACCGCCGAACACTCCGGCGGCATGCCGTGCAATAGCTGCCACAAGCCCCACAACCCG
CACATCTAGGAGCCTGCAAA

Downstream 100 bases:

>100_bases
TGTTCGGTCCGATAGGAGCCCTATGATGATCCCCGGCGTAGATGGATTCATGTACCCCAATGAGATCGAGCTGCAATGGA
GCGTGCTCATTGTGCTCTAC

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MEITRRDLIEIGGKLLMIASVGASLEQITGAEEPPEVYKMADHWWGMIIDIDKCIGCGNCVRACSNENQVPTGYFRTWVE
RYEVTEGNPNPRVESPNGAIDGFPPSPHTGIKSFFVPKLCNHCVDSPCVQVCPVGATFVSPDGVVLVDKDYCLGCRYCVQ
ACPYGCRYLHPERETVDKCTLCYHRITKGLTTACCENCPTGARQLVDFKNPKDPVHQFLRENKVMVLKPQMATQAKVYYK
NLDGSVR

Sequences:

>Translated_247_residues
MEITRRDLIEIGGKLLMIASVGASLEQITGAEEPPEVYKMADHWWGMIIDIDKCIGCGNCVRACSNENQVPTGYFRTWVE
RYEVTEGNPNPRVESPNGAIDGFPPSPHTGIKSFFVPKLCNHCVDSPCVQVCPVGATFVSPDGVVLVDKDYCLGCRYCVQ
ACPYGCRYLHPERETVDKCTLCYHRITKGLTTACCENCPTGARQLVDFKNPKDPVHQFLRENKVMVLKPQMATQAKVYYK
NLDGSVR
>Mature_247_residues
MEITRRDLIEIGGKLLMIASVGASLEQITGAEEPPEVYKMADHWWGMIIDIDKCIGCGNCVRACSNENQVPTGYFRTWVE
RYEVTEGNPNPRVESPNGAIDGFPPSPHTGIKSFFVPKLCNHCVDSPCVQVCPVGATFVSPDGVVLVDKDYCLGCRYCVQ
ACPYGCRYLHPERETVDKCTLCYHRITKGLTTACCENCPTGARQLVDFKNPKDPVHQFLRENKVMVLKPQMATQAKVYYK
NLDGSVR

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=196, Percent_Identity=36.734693877551, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI226510944, Length=241, Percent_Identity=29.4605809128631, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787872, Length=162, Percent_Identity=35.8024691358025, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787122, Length=159, Percent_Identity=35.8490566037736, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787749, Length=193, Percent_Identity=32.6424870466321, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1790326, Length=193, Percent_Identity=31.6062176165803, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787740, Length=93, Percent_Identity=40.8602150537634, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787478, Length=93, Percent_Identity=40.8602150537634, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789370, Length=215, Percent_Identity=31.6279069767442, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082180, Length=159, Percent_Identity=32.7044025157233, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787963, Length=213, Percent_Identity=23.943661971831, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367245, Length=166, Percent_Identity=30.1204819277108, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082179, Length=100, Percent_Identity=39, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788811, Length=94, Percent_Identity=39.3617021276596, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27546; Mature: 27546

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
9.7 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
9.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEITRRDLIEIGGKLLMIASVGASLEQITGAEEPPEVYKMADHWWGMIIDIDKCIGCGNC
CCCHHHHHHHHCCCEEEEEHHCCHHHHHCCCCCCHHHHHHHHHHHEEEEEHHHHHCCHHH
VRACSNENQVPTGYFRTWVERYEVTEGNPNPRVESPNGAIDGFPPSPHTGIKSFFVPKLC
HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
NHCVDSPCVQVCPVGATFVSPDGVVLVDKDYCLGCRYCVQACPYGCRYLHPERETVDKCT
HHHCCCCCHHHCCCCCEEECCCCEEEECCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHH
LCYHRITKGLTTACCENCPTGARQLVDFKNPKDPVHQFLRENKVMVLKPQMATQAKVYYK
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHC
NLDGSVR
CCCCCCC
>Mature Secondary Structure
MEITRRDLIEIGGKLLMIASVGASLEQITGAEEPPEVYKMADHWWGMIIDIDKCIGCGNC
CCCHHHHHHHHCCCEEEEEHHCCHHHHHCCCCCCHHHHHHHHHHHEEEEEHHHHHCCHHH
VRACSNENQVPTGYFRTWVERYEVTEGNPNPRVESPNGAIDGFPPSPHTGIKSFFVPKLC
HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
NHCVDSPCVQVCPVGATFVSPDGVVLVDKDYCLGCRYCVQACPYGCRYLHPERETVDKCT
HHHCCCCCHHHCCCCCEEECCCCEEEECCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHH
LCYHRITKGLTTACCENCPTGARQLVDFKNPKDPVHQFLRENKVMVLKPQMATQAKVYYK
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHC
NLDGSVR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]