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The map label for this gene is nrfD [C]

Identifier: 116624727

GI number: 116624727

Start: 7083888

End: 7085060

Strand: Reverse

Name: nrfD [C]

Synonym: Acid_5651

Alternate gene names: 116624727

Gene position: 7085060-7083888 (Counterclockwise)

Preceding gene: 116624728

Following gene: 116624726

Centisome position: 71.09

GC content: 59.42

Gene sequence:

>1173_bases
ATGATGATCCCCGGCGTAGATGGATTCATGTACCCCAATGAGATCGAGCTGCAATGGAGCGTGCTCATTGTGCTCTACCC
GTTCATTACGGGATTGGTGGCCGGAGCCTTCATCCTTGCCTCCCTGGAACGCGTGTTCAATGTGGAAGCGGTGCGCCCCA
CCTACCGGCTTGCCCTGCTCACCGCGCTCTCGTTCCTGCTGGTGGCGCCGCTCCCCCTGCAACTCCACCTCGGCCATCCC
GAGCGCTCCTTTGAGATGTACCTCACGCCGCACCGCTCGTCGGCCATGGCGATGTTCGGCTTCGTCTACCTCTGGTATCT
CGCGGTCGTGCTCCTGCTCGAAATCTGGCTCGATTACCGCGCCGATATCGTGCGCCTGGCGCAATCCAGCAAAGGCTTCA
CGCGCCTTATCTACAAAGCACTGACGCTTGGATCCATGAACGTCAGCCCCGGTGCGCGCGCCATCGACGACAAGGTGGGC
TACGCGATCACGGTGATCGGCATCCCTTCCGCCTTCATGCTCCACGGCTACGTCGGCTTCATCTTCGGCTCCATCAAGGC
CAACCCGTGGTGGAGCACTCCGCTGATGCCGATCGTCTTCATCTTCTCCGCCATGGTCTCCGGCATCGCCGCCGTACTGC
TGCTCTACATGGCTTCGATGAAAGTGCGCAAGACGCCGATCGATATGCGCTGCGTTGACACCATCGCCAAATACCTGTTC
TACACGTTCGTCATCGATTTCACGCTCGAAATGCTCGACCTGATCCACCGCACCTACGAATCCGACGAGAGCTTCAACAG
CCTGGATTTCATGGTGCACACGCGCCTCTGGTTCTCTCACGTCATTCTCCAGATCCTGATCGGAACCCTGGTGCCGCTCG
CGCTCCTCGCGGCCAACCAGCTCTGGACATTCGCCGAGGCCAAGCGCCGCGTCATGTACGTGGTCGCTTGCTCGCTGACC
ATGATCGGTATTTTCGCCATGCGCTGGAACGTGGTGATCGGCGGGCAGCTCTTCTCCAAGAGCTTCCTGGGTTATACCAC
TTACAAACTCGACTTAGTAACCCGCGAAGGCCTGTTCGCAGCCATTGCCCTGATGCTGCTGCCCTTCGCAATCTTTTTCG
TCCTGGTGAAGATCCTGCCGCCGTGGCAGGAGAGCGAGGCTCACAAAGCCTGA

Upstream 100 bases:

>100_bases
AAAGTGATGGTCCTGAAGCCGCAGATGGCGACCCAGGCCAAGGTCTATTACAAGAACCTGGATGGTTCGGTTCGATAATG
TTCGGTCCGATAGGAGCCCT

Downstream 100 bases:

>100_bases
GGAGGTTGCCTTGTCGCAACCACTGTCGCAGCCCGAATGGGACGCGCTGGCCCACGACGTCCAGGATCTTCGGACGCGCG
TAGCCCGCATTGAGTTGGCG

Product: polysulfide reductase NrfD

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: Molybdopterin Oxidoreductase Membrane Subunit; Oxidoreductase Membrane Subunit

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MMIPGVDGFMYPNEIELQWSVLIVLYPFITGLVAGAFILASLERVFNVEAVRPTYRLALLTALSFLLVAPLPLQLHLGHP
ERSFEMYLTPHRSSAMAMFGFVYLWYLAVVLLLEIWLDYRADIVRLAQSSKGFTRLIYKALTLGSMNVSPGARAIDDKVG
YAITVIGIPSAFMLHGYVGFIFGSIKANPWWSTPLMPIVFIFSAMVSGIAAVLLLYMASMKVRKTPIDMRCVDTIAKYLF
YTFVIDFTLEMLDLIHRTYESDESFNSLDFMVHTRLWFSHVILQILIGTLVPLALLAANQLWTFAEAKRRVMYVVACSLT
MIGIFAMRWNVVIGGQLFSKSFLGYTTYKLDLVTREGLFAAIALMLLPFAIFFVLVKILPPWQESEAHKA

Sequences:

>Translated_390_residues
MMIPGVDGFMYPNEIELQWSVLIVLYPFITGLVAGAFILASLERVFNVEAVRPTYRLALLTALSFLLVAPLPLQLHLGHP
ERSFEMYLTPHRSSAMAMFGFVYLWYLAVVLLLEIWLDYRADIVRLAQSSKGFTRLIYKALTLGSMNVSPGARAIDDKVG
YAITVIGIPSAFMLHGYVGFIFGSIKANPWWSTPLMPIVFIFSAMVSGIAAVLLLYMASMKVRKTPIDMRCVDTIAKYLF
YTFVIDFTLEMLDLIHRTYESDESFNSLDFMVHTRLWFSHVILQILIGTLVPLALLAANQLWTFAEAKRRVMYVVACSLT
MIGIFAMRWNVVIGGQLFSKSFLGYTTYKLDLVTREGLFAAIALMLLPFAIFFVLVKILPPWQESEAHKA
>Mature_390_residues
MMIPGVDGFMYPNEIELQWSVLIVLYPFITGLVAGAFILASLERVFNVEAVRPTYRLALLTALSFLLVAPLPLQLHLGHP
ERSFEMYLTPHRSSAMAMFGFVYLWYLAVVLLLEIWLDYRADIVRLAQSSKGFTRLIYKALTLGSMNVSPGARAIDDKVG
YAITVIGIPSAFMLHGYVGFIFGSIKANPWWSTPLMPIVFIFSAMVSGIAAVLLLYMASMKVRKTPIDMRCVDTIAKYLF
YTFVIDFTLEMLDLIHRTYESDESFNSLDFMVHTRLWFSHVILQILIGTLVPLALLAANQLWTFAEAKRRVMYVVACSLT
MIGIFAMRWNVVIGGQLFSKSFLGYTTYKLDLVTREGLFAAIALMLLPFAIFFVLVKILPPWQESEAHKA

Specific function: Probably Involved In The Transfer Of Electrons From The Quinone Pool To The Type-C Cytochromes. [C]

COG id: COG4881

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44083; Mature: 44083

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIPGVDGFMYPNEIELQWSVLIVLYPFITGLVAGAFILASLERVFNVEAVRPTYRLALL
CCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHH
TALSFLLVAPLPLQLHLGHPERSFEMYLTPHRSSAMAMFGFVYLWYLAVVLLLEIWLDYR
HHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADIVRLAQSSKGFTRLIYKALTLGSMNVSPGARAIDDKVGYAITVIGIPSAFMLHGYVGF
HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCEEEEEEECCHHHHHHHHHHH
IFGSIKANPWWSTPLMPIVFIFSAMVSGIAAVLLLYMASMKVRKTPIDMRCVDTIAKYLF
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YTFVIDFTLEMLDLIHRTYESDESFNSLDFMVHTRLWFSHVILQILIGTLVPLALLAANQ
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWTFAEAKRRVMYVVACSLTMIGIFAMRWNVVIGGQLFSKSFLGYTTYKLDLVTREGLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHCCCEEEEEEEEEHHHHHH
AIALMLLPFAIFFVLVKILPPWQESEAHKA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MMIPGVDGFMYPNEIELQWSVLIVLYPFITGLVAGAFILASLERVFNVEAVRPTYRLALL
CCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHH
TALSFLLVAPLPLQLHLGHPERSFEMYLTPHRSSAMAMFGFVYLWYLAVVLLLEIWLDYR
HHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADIVRLAQSSKGFTRLIYKALTLGSMNVSPGARAIDDKVGYAITVIGIPSAFMLHGYVGF
HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCEEEEEEECCHHHHHHHHHHH
IFGSIKANPWWSTPLMPIVFIFSAMVSGIAAVLLLYMASMKVRKTPIDMRCVDTIAKYLF
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
YTFVIDFTLEMLDLIHRTYESDESFNSLDFMVHTRLWFSHVILQILIGTLVPLALLAANQ
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWTFAEAKRRVMYVVACSLTMIGIFAMRWNVVIGGQLFSKSFLGYTTYKLDLVTREGLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHCCCEEEEEEEEEHHHHHH
AIALMLLPFAIFFVLVKILPPWQESEAHKA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA