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The map label for this gene is ygbM [C]

Identifier: 116624570

GI number: 116624570

Start: 6889279

End: 6890139

Strand: Reverse

Name: ygbM [C]

Synonym: Acid_5494

Alternate gene names: 116624570

Gene position: 6890139-6889279 (Counterclockwise)

Preceding gene: 116624572

Following gene: 116624569

Centisome position: 69.14

GC content: 59.23

Gene sequence:

>861_bases
GTGATACTCATGCTGTACATGCGACGCAGAGACTTTTTCCCCGCGCTGGCGGCATCGGCCGCGCTGGCACAGACCTCCGC
CCCGAAAAAAACGGGGCGTCTGAGGCAGTGTGTGACCGGCGGCGTCTTCGCCCGCGGCACGAGCCTGGAGGATGGCTGCA
AACTGGCGCAATCCCTGGGTATCGTCGGCTATGACCTGAAGGGACCTGCCGACTGGCCGACGCTCAAGAAATACGACCTG
ACCCCGACCTTGTATCCGCCGGGACCGGGCGGCACGATTCCCGACGCGCTCAATCGCAAGGAGAATCACGAGAAGCTGGA
AGCGGCGATGCACGCCGCCATCGACGAAGCCAAAGCCAACGGGGTGCCGAACATCATCACCTTCAGCGGCAACCGCAAAG
GCATGGCGGATGCGGAAGGCGCCGACAATTGCGTGCTGTTCCTCAATAAGGTGAAGGCCCACGCCGAAGACAAGGGCATC
AACATCTGCATGGAGTACCTGAACAGCAAGGTGAACCACAAGGACTACATGTTCGACCACATCGCCTGGGGCGTGGATGT
GATGAAGCGGGTGAACTCGCCGAACGTGAAGATTTTGTACGATATTTATCACGCGCAGATTATGGACGGCGATATCGTCC
GCAATATTCGCGACAACATCAAGTGGATCGGCCATTTCCATACCGGCGGGAATCCCGACCGCAAGGAAATCGACGAGACG
CAGGAGTTGAACTACCGCTTCATCGCGCAGGCCATCGCGGACCTTAATTTCACGGGATACGTGGGGCACGAATACTCGCC
GCGAAATCCGGCTAACGCGGAGGCGAGCCTCAAGCGCGCCATCGAGATCTTCACGGTCTGA

Upstream 100 bases:

>100_bases
GCGCAACCAGGAAGAAAACGTACAAAGGACGCATAGAGGGATTGTAGGACAGACGATCAGCATTTGTCGTCTGGCGGCAA
GTTGCACTCGATGCAGCCCT

Downstream 100 bases:

>100_bases
AGGCGCCTTCCGGGATACCATAGCGACATGGATCTTTCCGGAAAAAAGATTGCAATTCTGGTGGACACGCTCTACCAGGA
AATGGAAGTCTGGTATCCGC

Product: xylose isomerase domain-containing protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MILMLYMRRRDFFPALAASAALAQTSAPKKTGRLRQCVTGGVFARGTSLEDGCKLAQSLGIVGYDLKGPADWPTLKKYDL
TPTLYPPGPGGTIPDALNRKENHEKLEAAMHAAIDEAKANGVPNIITFSGNRKGMADAEGADNCVLFLNKVKAHAEDKGI
NICMEYLNSKVNHKDYMFDHIAWGVDVMKRVNSPNVKILYDIYHAQIMDGDIVRNIRDNIKWIGHFHTGGNPDRKEIDET
QELNYRFIAQAIADLNFTGYVGHEYSPRNPANAEASLKRAIEIFTV

Sequences:

>Translated_286_residues
MILMLYMRRRDFFPALAASAALAQTSAPKKTGRLRQCVTGGVFARGTSLEDGCKLAQSLGIVGYDLKGPADWPTLKKYDL
TPTLYPPGPGGTIPDALNRKENHEKLEAAMHAAIDEAKANGVPNIITFSGNRKGMADAEGADNCVLFLNKVKAHAEDKGI
NICMEYLNSKVNHKDYMFDHIAWGVDVMKRVNSPNVKILYDIYHAQIMDGDIVRNIRDNIKWIGHFHTGGNPDRKEIDET
QELNYRFIAQAIADLNFTGYVGHEYSPRNPANAEASLKRAIEIFTV
>Mature_286_residues
MILMLYMRRRDFFPALAASAALAQTSAPKKTGRLRQCVTGGVFARGTSLEDGCKLAQSLGIVGYDLKGPADWPTLKKYDL
TPTLYPPGPGGTIPDALNRKENHEKLEAAMHAAIDEAKANGVPNIITFSGNRKGMADAEGADNCVLFLNKVKAHAEDKGI
NICMEYLNSKVNHKDYMFDHIAWGVDVMKRVNSPNVKILYDIYHAQIMDGDIVRNIRDNIKWIGHFHTGGNPDRKEIDET
QELNYRFIAQAIADLNFTGYVGHEYSPRNPANAEASLKRAIEIFTV

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=166, Percent_Identity=30.1204819277108, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI300068964, Length=158, Percent_Identity=29.1139240506329, Blast_Score=83, Evalue=3e-16,
Organism=Escherichia coli, GI1789095, Length=203, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786718, Length=110, Percent_Identity=32.7272727272727, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 31738; Mature: 31738

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILMLYMRRRDFFPALAASAALAQTSAPKKTGRLRQCVTGGVFARGTSLEDGCKLAQSLG
CEEEEEEHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCC
IVGYDLKGPADWPTLKKYDLTPTLYPPGPGGTIPDALNRKENHEKLEAAMHAAIDEAKAN
CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC
GVPNIITFSGNRKGMADAEGADNCVLFLNKVKAHAEDKGINICMEYLNSKVNHKDYMFDH
CCCEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHH
IAWGVDVMKRVNSPNVKILYDIYHAQIMDGDIVRNIRDNIKWIGHFHTGGNPDRKEIDET
HHHHHHHHHHCCCCCEEEEEEEEEHHHCCCHHHHHHHHCCEEEEEECCCCCCCHHHHHHH
QELNYRFIAQAIADLNFTGYVGHEYSPRNPANAEASLKRAIEIFTV
HHCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MILMLYMRRRDFFPALAASAALAQTSAPKKTGRLRQCVTGGVFARGTSLEDGCKLAQSLG
CEEEEEEHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCC
IVGYDLKGPADWPTLKKYDLTPTLYPPGPGGTIPDALNRKENHEKLEAAMHAAIDEAKAN
CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHC
GVPNIITFSGNRKGMADAEGADNCVLFLNKVKAHAEDKGINICMEYLNSKVNHKDYMFDH
CCCEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHH
IAWGVDVMKRVNSPNVKILYDIYHAQIMDGDIVRNIRDNIKWIGHFHTGGNPDRKEIDET
HHHHHHHHHHCCCCCEEEEEEEEEHHHCCCHHHHHHHHCCEEEEEECCCCCCCHHHHHHH
QELNYRFIAQAIADLNFTGYVGHEYSPRNPANAEASLKRAIEIFTV
HHCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7851418 [H]